BAC Information

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BAC

Clone NameMSMg01-179C16
Chromosome6 (Build37)
Map Location 16,498,493 - 16,590,933
singlet/doubletdoublet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179C16.T7 (MSMg01no179_c16.b1)MSMg01-179C16.TJ (MSMg01no179_c16.g1)
ACCAG373035AG373036
length748748
length of high quality
(start - end)		684 (46 - 729)665 (80 - 744)
definitionCHROMAT_FILE: MSMg01no179_c16.b1 PHD_FILE: MSMg01no179_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:06 2005CHROMAT_FILE: MSMg01no179_c16.g1 PHD_FILE: MSMg01no179_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,498,493 - 16,499,173)(16,590,269 - 16,590,933)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGCCGCGG
AATTCAATTAATACACCCAAAGACACCTTTATAGAGGGCAGCCATAATTT
AAATGACAGCAGGAAGTAATTTTGCTAGATATAAGTCAAATTTTTAGAAT
TTCATGTTCTACATTATTAATTTTTTTAGAAAAAAATCTTTAAAAAACTG
ATTCCTTTGGCTAAAAGAAGTATATACCCTTTGTTCAAAGTTTCCTTAAA
TTGAAATAATTTTACATAACTATTCTGGCCTTTTCTTTGTAAAACTAAGT
ATCCTTCTCATCGAGAGTTGGAATAAATCAGTTAATATGTCCCTTAAATA
CTCCTTGTGTTTTTCAGTATTTAGTGCCTCCAGGTTTCTAAGAGATAATG
AAATCGGCTCTCTAAATTTGTTCTCAAAAGCAAATAGATGATCATTTTTT
AATGTGGAAATTCTGAGAAGAAAATAAATTGAGGCACTAAAGAATAGGGT
AAATGGCAACCTTCAACAATAAAGGTTAGATTTAATCCGAGCAGGCATCT
GACAAGCGGCACTACACGTTGAATCCATATCAGTGTGACCCTACCACGGA
CCTCCTTTATCCATTAATCTACACTTCTTTTAGCAGAGAGTTGAATTAGC
TCACTGACAGGGCATTGCCTGCTGATTAGCGTACATCATTCTATAGAGCA
GATATAAAAGAATCACCCTCCTTCATTTAACTCCTCTGTCCTACAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCATTCAGAGTGGCTATTG
TGTAATGTGTCATAAAAATTAAATACAACAGATATACTAATAAGGGGATT
TTCATTATCATACAAATACACAGATAACCAGTGAGGTCAATGGCAAACAC
AATAATTTCCAATGAAAGTATGCATGGGAGGCCCCTTTTTCCTGAAAGTG
TGATGCTGTTAATTGAATGGCTTGACTCTAGCAGTAGAAGGAAAAATGAT
CCCTGAGCTAGAAAGCCATAATCGACCCTCCCTGAGCAGGCATGGTGATA
TCTGGGAAGATAAAATACCAGTTCAACACTAACTAAGCTTTGTTAGTGGT
AGGGACGCCACTTCAGATTAAAATGAAAGCTATAAGCTTTCACAATAGAA
TTTCTTTTTACAATAGAATTTTTTAATTGATAAACTATTACAAAGTAGAT
ATTGTTTTAAAATTGTAGTAGTGGAACACATCTACACAAGGCCTCATCTT
TTTGTCACTTTCTTGTGGCCCTGTGCCAGAAAATAGGACTATGCTGCCAG
ATACTTCATTTCACTATTAATTCTAGAAGCACTTACTCGAGCCTTTTCAC
TACAGAGAGGTGCTATTGGCTGTATTGTAGCCTTCAGCTACTGCCCAAGT
GCCATCTGCAGTTTGGGAGCGCAAATCCCATCTATGAATACAAAGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_c16.b1 MSMg01no179_c16.b1 CHROMAT_FILE:
MSMg01no179_c16.b1 PHD_FILE: MSMg01no179_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:06 2005
         (684 letters)



>mm_chr6_16498290_16499373
          Length = 1084

 Score = 1301 bits (673), Expect = 0.0
 Identities = 679/681 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaattaatacacccaaagacacctttatagagggcagccataatttaaatgaca 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaattaatacacctaaagacacctttatagagggcagccataatttaaatgaca 263

                                                                       
Query: 64  gcaggaagtaattttgctagatataagtcaaatttttagaatttcatgttctacattatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaggaagtaattttgctagatataagtcaaatttttagaatttcatgttctacattatt 323

                                                                       
Query: 124 aatttttttagaaaaaaatctttaaaaaactgattcctttggctaaaagaagtatatacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatttttttagaaaaaaatctttaaaaaactgattcctttggctaaaagaagtatatacc 383

                                                                       
Query: 184 ctttgttcaaagtttccttaaattgaaataattttacataactattctggccttttcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttgttcaaagtttccttaaattgaaataattttacataactattctggccttttcttt 443

                                                                       
Query: 244 gtaaaactaagtatccttctcatcgagagttggaataaatcagttaatatgtcccttaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaaaactaagtatccttctcatcgagagttggaataaatcagttaatatgtcccttaaa 503

                                                                       
Query: 304 tactccttgtgtttttcagtatttagtgcctccaggtttctaagagataatgaaatcggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tactccttgtgtttttcagtatttagtgcctccaggtttctaagagataatgaaatcggc 563

                                                                       
Query: 364 tctctaaatttgttctcaaaagcaaatagatgatcattttttaatgtggaaattctgaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctctaaatttgttctcaaaagcaaatagatgatcattttttaatgtggaaattctgaga 623

                                                                       
Query: 424 agaaaataaattgaggcactaaagaatagggtaaatggcaaccttcaacaataaaggtta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaaaataaattgaggcactaaagaatagggtaaatggcaaccttcaacaataaaggtta 683

                                                                       
Query: 484 gatttaatccgagcaggcatctgacaagcggcactacacgttgaatccatatcagtgtga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatttaatccgagcaggcatctgacaagcggcactacacgttgaatccatatcagtgtga 743

                                                                       
Query: 544 ccctaccacggacctcctttatccattaatctacacttcttttagcagagagttgaatta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccctaccacggacctcctttatccattaatctacacttcttttagcagagagttgaatta 803

                                                                       
Query: 604 gctcactgacagggcattgcctgctgattagcgtacatcattctatagagcagatataaa 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 gctcactgacagggcattgcctgctgattagcgtacatcattctatagagcagaaataaa 863

                                
Query: 664 agaatcaccctccttcattta 684
           |||||||||||||||||||||
Sbjct: 864 agaatcaccctccttcattta 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no179_c16.g1 MSMg01no179_c16.g1 CHROMAT_FILE:
MSMg01no179_c16.g1 PHD_FILE: MSMg01no179_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:06 2005
         (665 letters)



>mm_chr6_16590069_16591133
          Length = 1065

 Score = 1247 bits (645), Expect = 0.0
 Identities = 660/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcattcagagtggctattgtgtaatgtgtcataaaaattaaatacaacagatatacta 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 865 agtcattcagagtggctattgtgtaatgtgtcataaaaattaaatgcaacagatatacta 806

                                                                       
Query: 61  ataaggggattttcattatcatacaaatacacagataaccagtgaggtcaatggcaaaca 120
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| 
Sbjct: 805 ataaggggattttcattatcatacaaatatacagacaaccagtgaggtcaatggcaaact 746

                                                                       
Query: 121 caataatttccaatgaaagtatgcatgggaggcccctttttcctgaaagtgtgatgctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caataatttccaatgaaagtatgcatgggaggcccctttttcctgaaagtgtgatgctgt 686

                                                                       
Query: 181 taattgaatggcttgactctagcagtagaaggaaaaatgatccctgagctagaaagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taattgaatggcttgactctagcagtagaaggaaaaatgatccctgagctagaaagccat 626

                                                                       
Query: 241 aatcgaccctccctgagcaggcatggtgatatctgggaagataaaataccagttcaacac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 aatcgaccctccctgagcaggcatggtgatatctgggaagataaaataccagttcagcac 566

                                                                       
Query: 301 taactaagctttgttagtggtagggacgccacttcagattaaaatgaaagctataagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taactaagctttgttagtggtagggacgccacttcagattaaaatgaaagctataagctt 506

                                                                       
Query: 361 tcacaatagaatttctttttacaatagaattttttaattgataaactattacaaagtaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcacaatagaatttctttttacaatagaattttttaattgataaactattacaaagtaga 446

                                                                       
Query: 421 tattgttttaaaattgtagtagtggaacacatctacacaaggcctcatctttttgtcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattgttttaaaattgtagtagtggaacacatctacacaaggcctcatctttttgtcact 386

                                                                       
Query: 481 ttcttgtggccctgtgccagaaaataggactatgctgccagatacttcatttcactatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcttgtggccctgtgccagaaaataggactatgctgccagatacttcatttcactatta 326

                                                                       
Query: 541 attctagaagcacttactcgagccttttcactacagagaggtgctattggctgtattgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attctagaagcacttactcgagccttttcactacagagaggtgctattggctgtattgta 266

                                                                       
Query: 601 gccttcagctactgcccaagtgccatctgcagtttgggagcgcaaatcccatctatgaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccttcagctactgcccaagtgccatctgcagtttgggagcgcaaatcccatctatgaat 206

                
Query: 661 acaaa 665
           |||||
Sbjct: 205 acaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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