Query= MSMg01no179_m20.b1 MSMg01no179_m20.b1 CHROMAT_FILE:
MSMg01no179_m20.b1 PHD_FILE: MSMg01no179_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:54 2005
(699 letters)
>mm_chr6_21565016_21566114
Length = 1099
Score = 1282 bits (663), Expect = 0.0
Identities = 687/695 (98%)
Strand = Plus / Plus
Query: 5 gaattcatgatgtctggcctccaaactggatttcaagtgcttgtcattattctaccctag 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgatgtcagggttccaaactggatttcaagtgcttgtcattattctaccctag 264
Query: 65 accccaattcccttatacaataaaaggatttctatatattttgtaaccttcctgaaacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accccaattcccttatacaataaaaggatttctatatattttgtaaccttcctgaaacat 324
Query: 125 aacttgatttctatatgatttgagaataacaatttcagtaaattatatttgtagtacatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacttgatttctatatgatttgagaataacaatttcagtaaattatatttgtagtacatc 384
Query: 185 ttctgcaattaaagccttccaattttctactcctaaaaagataagatgatgcagaatatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgcaattaaagccttccaattttctactcctaaaaagataagatgatgcagaatatc 444
Query: 245 tcatcatttggcaatttcctatcattagactgtaatttcagcagtacagatacatctatg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 tcatcatttggcaatttcctatcattagactgtaatttcagcagtacagatacacctatg 504
Query: 305 cttaacagcaagaaacaaggatatgtccccaggaaatgacaattctgtcttgtgtttgca 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcaacagcaagaaacaaggatatgtccccaggaaatgacaattctgtcttgtgtttgca 564
Query: 365 caaaactcgcacctaagaaactgaaaggaatttaagaaaaatgaatttggaaatactcag 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaaactcacacctaagaaactgaaaggaatttaagaaaaatgaatttggaaatactcag 624
Query: 425 acacctgtaagttaccatgttctctgtggagatgaagtgtgcaacattgaaacaaagtaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacctgtaagttaccatgttctctgtggagatgaagtgtgcaacattgaaacaaagtaa 684
Query: 485 acatctcctctctggccttagctgaagaatgaaagaaccatcataagtacatatcttact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatctcctctctggccttagctgaagaatgaaagaaccatcataagtacatatcttact 744
Query: 545 actgatacagagtggcttttctttctcactcacacaaataaatattaataacactagaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actgatacagagtggcttttctttctcactcacacaaataaatattaataacactagaca 804
Query: 605 gctcacacttctgtcactatgactgttttattttcactgaataaagtactcatccattgg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gctcacacttctgtcactatgactgttttattttcactgaataaagtactcatccattgg 864
Query: 665 ggatatgttctacgatcctcagtgtatgctgaaac 699
| ||||||||||||||| |||||||||||||||||
Sbjct: 865 gaatatgttctacgatcttcagtgtatgctgaaac 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_m20.g1 MSMg01no179_m20.g1 CHROMAT_FILE:
MSMg01no179_m20.g1 PHD_FILE: MSMg01no179_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:54 2005
(533 letters)
>mm_chr6_21661881_21662815
Length = 935
Score = 915 bits (473), Expect = 0.0
Identities = 519/535 (97%), Gaps = 2/535 (0%)
Strand = Plus / Minus
Query: 1 ctgttccattctctatgttccatagcaacttctcatttgataactttcatacttcatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctgttccattctctatgttccatagcaacttctcatttgataactttcatacttcatatt 676
Query: 61 atccatagatgatgtagtatttatgtttttagtcttatctgtggtacctgggattgaacc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 675 atccatagatgatgtagtatttatgtttttagtcttgtctgtggtacctgggattgaacc 616
Query: 121 aagaatattttccacgctagtcagggggtgtctcgctgaactgtgtctccagtctgacat 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aagaatattttccatgctagtcagggggtgtctcgctgaactgtgtctccagtctgacat 556
Query: 181 tttccctttacctttcattcttcataaaataaagtt--gagagtgggagctgttggactt 238
|||| |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 555 tttctctttacttttcattctttataaaataaagttgagagagtgggagctgttggactt 496
Query: 239 tatgtcttcctagcatgaagcagcctctcgctgtgtatcaggagagtacatgcattttct 298
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 495 tatgtcttcctagcatgaagcagcctctcgctgtatatcaggagagtacatgcattttct 436
Query: 299 cttatttaatactagaggtctaagtgcttattcctgggaaagaacaggaaatgaacaccc 358
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 cttacttaatactagaggtctaagtgcttattcctgggaaagaataggaaatgaacaccc 376
Query: 359 ttattaacatggatcttgtggaaaacattttgtgtcaacctgtagatgggaattgcagag 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 375 ttattaacatggatcttgtggaaaatattttgtgtcaacctgtagatgggaattgcagag 316
Query: 419 aaactggtcaaggaagggccagtgatagtgacaggctggatactgaccctagtgcatttg 478
||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaactggccaaggaagagccggtgatagtgacaggctggatactgaccctagtgcatttg 256
Query: 479 agggccccattggggctctgttcaatgttttgattctctaataacacattcttag 533
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 255 agggccccattggggctctgttcaatgctttgattctccaataacacattcttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 935
Length adjustment: 10
Effective length of query: 523
Effective length of database: 925
Effective search space: 483775
Effective search space used: 483775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
