BAC Information

Click to search

BAC

Clone NameMSMg01-180J10
Chromosome6 (Build37)
Map Location 64,826,307 - 64,826,440
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid2, Atoh1
Downstream geneLOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180J10.T7 (MSMg01no180_j10.b1)MSMg01-180J10.TJ (MSMg01no180_j10.g1)
ACCAG374024AG374025
length780730
length of high quality
(start - end)
141 (33 - 173)531 (67 - 597)
definitionCHROMAT_FILE: MSMg01no180_j10.b1 PHD_FILE: MSMg01no180_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:52 2005CHROMAT_FILE: MSMg01no180_j10.g1 PHD_FILE: MSMg01no180_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCACACTTCAAAGAGGATCCGCGGAATTCCATC
TTTTCTCTCTGAAGGCATATTATTTTCCCCTAGGTCTGACTTTCAAGATT
TCTCCACCTCCCACCATTGCTATACTGGAGAACAAGTTGCAAATAAATTT
TGGGGGGTTGGGGTCTGGGGGAGGGTATTTTTTTCCCCTCTTTTTTCCTC
CCCCTATCCCCCCCCCCCCCCCCCCCTTTTTTTTCCCCTCCCCTCTCCTC
TTTTTCCCTTTTTTTTTTTCCTCCCCCCTCTTTCATTCCCTCCCCTTTTT
TTTTTTTTTCCCTTCCCACTCCCTTTCCTTTTATCCTTCTCATTTCTCCC
CCCTTTTTTCCCCCCTCCCATATCCCTCTTTTTTTTTTTTTCCCCCCCCC
CCTTTTATCTTCTTCTTCTCCCCCCCCCTTCCCCCCCCCCCCTCTTCTCC
CTTTCTTCTCTCTTACTCTCTTCCCTCCCTCTTTCCTTCCTTCCCTCTTC
TCCCTCCCCCCCTTTTTTTTCTTCCTTCTATTTTTATTTTTCCCCCTTTT
TCTCCTCCTCTTTCTTCTCCCACCTCCTACCTTCTTTCTCCCCCTTCTCT
CCTTTTTTAAGTTATACTCTTTTTCCTCTTCCCCTCCTTTTCCACTCTCT
CTTCTTCTCTCTTCTCCCCTTTCTTTTTTTTTTCTCCTCCCCTTCTCTTC
CCTTTCTTCTTTCTCCCCCCCTTTTTTTCCTCCTATACCTTCTACTCTTT
TCTTTTCTTTTCTCTCTACCACCCCCTTCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACT
TGAAAAAATGTTCCACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACAT
GCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGTTAAC
ACATTCACAACGACCCTCACCAATATGTATTCCCTGATAAGCGGATATTA
TACCCAAACCTAGGATACCCACGATACAAGACATACTTTGCTATACCCGT
GATACTCACTATTAATGAATACTGCTGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_j10.b1 MSMg01no180_j10.b1 CHROMAT_FILE:
MSMg01no180_j10.b1 PHD_FILE: MSMg01no180_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:52 2005
         (141 letters)



>mm_chr6_64826100_64826640
          Length = 541

 Score =  207 bits (107), Expect = 2e-58
 Identities = 128/135 (94%), Gaps = 2/135 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattccatcttttctctctgaaggcatattattttcccctaggtctgactttcaagat 67
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaattccatcaatcctctctgaaggcatattattttcccctaggtctgactttcaagat 282

                                                                       
Query: 68  ttctccacctcccaccattgctatactggagaacaagttgcaaataaat-tttggggggt 126
           |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 281 ttctccacctcccaacattgctatactggagaacaagctgcaaataaatctttggggg-t 223

                          
Query: 127 tggggtctgggggag 141
           |||||||||||||||
Sbjct: 222 tggggtctgggggag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)