Query= MSMg01no180_k10.b1 MSMg01no180_k10.b1 CHROMAT_FILE:
MSMg01no180_k10.b1 PHD_FILE: MSMg01no180_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:56 2005
(518 letters)
>mm_chr6_45485185_45486102
Length = 918
Score = 980 bits (507), Expect = 0.0
Identities = 513/515 (99%)
Strand = Plus / Minus
Query: 4 ggaattcatttgctatctctggtcatgacatgacatatttaagttctcagagtttactat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggaattcatttgctatctgtggtcatgacatgacatatttaagttctcagagtttactat 659
Query: 64 gagatttcttgtcattatacttatcaaaaacacatttgagaaagcccaaaaggaaaaaca 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 658 gagatttcttgtcattatacttatcaaaaacacatttgagaaagcccaaaaggagaaaca 599
Query: 124 ccaattttataaaactattccgtcaatttaaaataaagaccaatattttagtaaaagaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ccaattttataaaactattccgtcaatttaaaataaagaccaatattttagtaaaagaat 539
Query: 184 actgtcttcctgacttaggaaacctacatcattaggtcattttattccagagtgctttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 actgtcttcctgacttaggaaacctacatcattaggtcattttattccagagtgctttaa 479
Query: 244 tcaccagtctcaggatgacatgcatattttaataactgcatttcattttaattttcagca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcaccagtctcaggatgacatgcatattttaataactgcatttcattttaattttcagca 419
Query: 304 ttttaaatgaaatataattttcttttctcattgaaataagtatagacatatatattataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttttaaatgaaatataattttcttttctcattgaaataagtatagacatatatattataa 359
Query: 364 attcatagcatgagcagaatactctctaactttgtgtacttcatctttattgtttgtcac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attcatagcatgagcagaatactctctaactttgtgtacttcatctttattgtttgtcac 299
Query: 424 ccatatttcattcataaacttttgtttaatttctcatttaaaaataaaggtgatgcagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccatatttcattcataaacttttgtttaatttctcatttaaaaataaaggtgatgcagaa 239
Query: 484 aaatgaatacttttctagaggtgggtgtataatgg 518
|||||||||||||||||||||||||||||||||||
Sbjct: 238 aaatgaatacttttctagaggtgggtgtataatgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_k10.g1 MSMg01no180_k10.g1 CHROMAT_FILE:
MSMg01no180_k10.g1 PHD_FILE: MSMg01no180_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:57 2005
(292 letters)
>mm_chr6_45335509_45336200
Length = 692
Score = 480 bits (248), Expect = e-140
Identities = 280/300 (93%), Gaps = 19/300 (6%)
Strand = Plus / Plus
Query: 1 tttctaaaggcacacaccaagaaagaaggacagaatacagttgttttcatggaaaaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctaaaggcacacaccaagaaagaaggacagaatacagttgttttcatggaaaaacag 260
Query: 61 taccattgtgatttgcaaaattatgcttgaataaatgaaacaaaatacatggaagcagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccattgtgatttgcaaaattatgcttgaataaatgaaacaaaatacatggaagcagga 320
Query: 121 attactggtaagaagtcttaatatgtaccccccccccacccaaacaaaatgagtgccagc 180
||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 321 attactggtaagaagtcttaatatg-----ccccccca----aacaaaatgagtgccagc 371
Query: 181 ttcaaatatctgttaaaaaaacatttatatatatttgcatatatatat-----atatatg 235
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 ttcaaatatctgttaaaaaaacatttatatatatttgcatatatatatgcaatatatatg 431
Query: 236 caatatatat--gc---tatatatatgctatatatattgcatatgtatggtataatgcta 290
| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctatatatatttgcatatatatatatgctatatatattgcatatgtatggtataatgcta 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
