Query= MSMg01no180_k14.b1 MSMg01no180_k14.b1 CHROMAT_FILE:
MSMg01no180_k14.b1 PHD_FILE: MSMg01no180_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:57 2005
(546 letters)
>mm_chr6_119038972_119039918
Length = 947
Score = 1035 bits (535), Expect = 0.0
Identities = 544/547 (99%), Gaps = 1/547 (0%)
Strand = Plus / Plus
Query: 1 gcagagcacggagggagggtaacaatgggaaactcggcctgactctgagttctaactaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagagcacggagggagggtaacaatgggaaactcggcctgactctgagttctaactaaa 260
Query: 61 tatggtgtcctacaccgggccgggtggatgatacaagagccgctggctccaagccactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggtgtcctacaccgggccgggtggatgatacaagagccgctggctccaagccactgg 320
Query: 121 aaagtgttcttcccaagaaggctgcctctcaagaagaggttgcaaaagtgaaccaagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtgttcttcccaagaaggctgcctctcaagaagaggttgcaaaagtgaaccaagctc 380
Query: 181 tgccagagactgcatcaccgtcaccatctcgggatgggggggggggg-gtctcagcaatg 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 381 tgccagagactgcatcaccgtcaccatctcgggatggggggggggggtgtctcggcaatg 440
Query: 240 tgaaagagtccaggaggagccttcggagaactcacaaagatgccctgaggaagtgctggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaagagtccaggaggagccttcggagaactcacaaagatgccctgaggaagtgctggt 500
Query: 300 gtgggctggctaacagcagacagatggcagccagccaaggtcaggcaagaaacaacacca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgggctggctaacagcagacagatggcagccagccaaggtcaggcaagaaacaacacca 560
Query: 360 agggaaagctctctggccctggtccctctgcatctttcccctctccctaagtctgaaatc 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggaaagctctctggccctggttcctctgcatctttcccctctccctaagtctgaaatc 620
Query: 420 ctcggcacaagaaagaggcagaagggggtaaagagttctggtccttttcctctgcccaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcggcacaagaaagaggcagaagggggtaaagagttctggtccttttcctctgcccaat 680
Query: 480 tctgaagccacagagaaggaagagcctctacccctgcagactagtggagctattagccat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgaagccacagagaaggaagagcctctacccctgcagactagtggagctattagccat 740
Query: 540 aaatgca 546
|||||||
Sbjct: 741 aaatgca 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_k14.g1 MSMg01no180_k14.g1 CHROMAT_FILE:
MSMg01no180_k14.g1 PHD_FILE: MSMg01no180_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:57 2005
(438 letters)
>mm_chr6_119191056_119191892
Length = 837
Score = 741 bits (383), Expect = 0.0
Identities = 425/439 (96%), Gaps = 2/439 (0%)
Strand = Plus / Minus
Query: 1 ctaccttggcttccgcagccactgatggtctgtgactgtgatgtttaacccgaatcct-c 59
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct: 752 ctaccttggcttccgcagccactgatggtctgtgactgtgatgtgtaagccgaatcctcc 693
Query: 60 cccaagctgcttttgaccgtggtgtttaccacagtaacggaaagcaaccaggacacccag 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cccaagctgctttagaccgtggtgtttaccacagtaacggaaagcaaccaggacacccag 633
Query: 120 catcccagaccagatcttaaccctggcccctctcaggtgatatcatgacttactgacccc 179
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 632 catcccagaccagatcttaaccctggcccctctcgggtgatatcctgacttactgacccc 573
Query: 180 tggacacagagggcttgtatttgtcacctcctcacacaacctgagctttcttcttcctgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggacacagagggcttgtatttgtcacctcctcacacaacctgagctttcttcttcctgt 513
Query: 240 gtcttctgtttctcggcacagagatgccccttagtgctttagcttcccaagtcccctcct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtcttctgtttctcggcacagagatgccccttagtgctttagcttcccaagtcccctcct 453
Query: 300 cgaggctatccctgccacgcggggtcagtcggtccctcttccctctgcttcccaggagtc 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct: 452 cgaggctatccctgccgcgcggggtcagtcggtccctcttccctctgcttccc-ggggtc 394
Query: 360 accgacccacccccacactacatgtttattttattctttctccgagagccttacaaggtg 419
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||
Sbjct: 393 accgacccacccccacaccacatgtttattctattccttctccgagagccttaggaggtg 334
Query: 420 gaaagaaagcctcactggc 438
|||||||||||||||||||
Sbjct: 333 gaaagaaagcctcactggc 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space: 355212
Effective search space used: 355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
