Query= MSMg01no181_d05.b1 MSMg01no181_d05.b1 CHROMAT_FILE:
MSMg01no181_d05.b1 PHD_FILE: MSMg01no181_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:37 2005
(674 letters)
>mm_chr6_5399486_5400557
Length = 1072
Score = 1214 bits (628), Expect = 0.0
Identities = 659/670 (98%), Gaps = 2/670 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggagccagcaaaacctatttttttttttcatctgtgtcttttattggaaagca 64
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 872 gaattcaggagccagtaaaaccta--tttttttttcatctgtgtcttttattggaaagca 815
Query: 65 aaactttcccatgagcctagtttatcactttttctcaaatctcagtcacacacacacaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aaactttcccatgagcctagtttatcactttttctcaaatctcagtcacacacacacaca 755
Query: 125 tcattataaacaaggaccattgaatatatggcaagaggaaatgaggagagagcataagcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tcattataaacaaggaccattgaatatatggcaagaggaaatgaggagagagcataagcc 695
Query: 185 agggagattccaaagtgctgcacttgagatagcaaacagctaggaactaggccacatctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agggagattccaaagtgctgcacttgagatagcaaacagctaggaactaggccacatctt 635
Query: 245 taaattatttcaacacgaactttaccctcgactggctgctcttacctggatcgattactt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 taaattatttcaacacgaactttaccctcgactggctgctcttacctggatcgattactt 575
Query: 305 atttacttttgcaattaatcattcttagttccatgaggaaaatcaagtttccacaccaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atttacttttgcaattaatcattcttagttccatgaggaaaatcaagtttccacaccaca 515
Query: 365 aataggagtcatagtgagcaactggtcaccacagtcaggacttttgctttttgatgtaac 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aataggagtcatcgtgagcaactggtcaccacagtcaggacttttgctttttgatgtaac 455
Query: 425 tttaatagcagcaatattatcagtattattagtatgtggggaggggcatctatattgtaa 484
||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 454 tttaatagcagcaatatcatcaatattattagtatgcggggaggggcatctatattgtaa 395
Query: 485 acataaatattccctaaggacagagggccctttaattatttgagtggattctaacatctt 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 394 acataaatattccctaaggacagagggccctttcattatttgagtggattctaacatctt 335
Query: 545 ttatttctttactttctatatctttcaccaaatactccaatgattctcccttcaactctt 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 334 ttatttctttactttctatatctttcacctaatactccaatgattctcccttcaactctt 275
Query: 605 aggaaaggaaggccagacgctggcctaactgtcataacggcagtaacactcatctccatt 664
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 274 aggaagggaaggccagacgctggtctaactgtcataacggcagtaacactcatctccatt 215
Query: 665 gaccaggtcg 674
||||||||||
Sbjct: 214 gaccaggtcg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1072
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1062
Effective search space: 705168
Effective search space used: 705168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_d05.g1 MSMg01no181_d05.g1 CHROMAT_FILE:
MSMg01no181_d05.g1 PHD_FILE: MSMg01no181_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:37 2005
(246 letters)
>mm_chr6_5350283_5350928
Length = 646
Score = 447 bits (231), Expect = e-130
Identities = 240/243 (98%)
Strand = Plus / Plus
Query: 1 cccatcaaccattcggaggcaaaggcattggcgaaaaatgagagaaagcaggaaaggtag 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cccatcaaccattcggaggcaaaggcattggtgaaaaatgagagaaagcaggaaaggtag 260
Query: 61 atatttgtgtgagagtagggaagactgcaaaaataatttactcaagaagtgtagtagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttgtgtgagagtagggaagactgcaaaaataatttactcaagaagtgtagtagcac 320
Query: 121 taagtgtagtagcactactgagtccaaaagatgcccctgaagccatgggaatgaaggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtgtagtagcactactgagtccaaaagatgcccctgaagccatgggaatgaaggggt 380
Query: 181 catcagcactgctgatctctgaggagggagggggaaaaggggagaagggaaagggagaga 240
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 381 catcagcactgctgatctctgaggagggagggggaaagggggagaaggggaagggagaga 440
Query: 241 gac 243
|||
Sbjct: 441 gac 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
