Query= MSMg01no181_f17.b1 MSMg01no181_f17.b1 CHROMAT_FILE:
MSMg01no181_f17.b1 PHD_FILE: MSMg01no181_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:48 2005
(573 letters)
>mm_chr6_132922815_132923787
Length = 973
Score = 389 bits (201), Expect = e-112
Identities = 309/390 (79%), Gaps = 74/390 (18%)
Strand = Plus / Minus
Query: 5 gaattcattgttttgcctacctccagagctgctttatttgaaaatgttaagacaatgtta 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 390 gaattcattgttttgcctacctccagagctgctttatttgaaaatgttaagacattgttg 331
Query: 65 tgaaactgtgatcaaatacaatttatagatggaaaattataaaattagtcttactgtact 124
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 330 tgaaactgtgatcaaatacaattaatagattgaaaattataaaattagtcttactgtact 271
Query: 125 gtaaatattaaccactacatctcccttctagctctaccatactatgtttgatatgaagat 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 270 gtaaatattaaccactacatctcccttctagctctagcatactatgtttgatatgaagat 211
Query: 185 ggttaattttctttt-tttt-tttt--ttc--tttctttt---tttttttttttttg--- 232
||||||||||||||| |||| |||| ||| |||||||| ||||||||||||||
Sbjct: 210 ggttaattttcttttcttttcttttctttccttttcttttctttttttttttttttgttt 151
Query: 233 ------------------------gnttttcaagacagggtttc---------------- 252
| ||||||||||||||||||
Sbjct: 150 tttttttgttttttttttttttttgtttttcaagacagggtttctctgtagtcctggctg 91
Query: 253 ----------------------caggctggcctcgaactcagaaatccacctgcctctgc 290
|||||||||||||||||||||||||| |||||||||||
Sbjct: 90 tcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgc 31
Query: 291 ctcccaagtgctgggattaaaggcatgtgc 320
||||||||||||||||||||||||||||||
Sbjct: 30 ctcccaagtgctgggattaaaggcatgtgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_f17.g1 MSMg01no181_f17.g1 CHROMAT_FILE:
MSMg01no181_f17.g1 PHD_FILE: MSMg01no181_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:48 2005
(663 letters)
>mm_chr6_132842880_132843942
Length = 1063
Score = 1243 bits (643), Expect = 0.0
Identities = 658/663 (99%)
Strand = Plus / Plus
Query: 1 ataatgggaaccttaggaaatggattcatttttctgatagtctgcatacactgggtccaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ataatgggaaccttaggaaatggattcatttttctgatagtctgcatagactgggtccaa 260
Query: 61 agaagaaaaatctctttagtggatcaaatccgcactgctctggcaattagcagaatcgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagaaaaatctctttagtggatcaaatccgcactgctctggcaattagcagaatcgct 320
Query: 121 ctaatttggttgatattcctagattggtgggtgtctgttcattacccagcattacatgaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ctaatttggttgatattcctagattggtgggtgtctgttcattacccagcattacacgaa 380
Query: 181 actggtaagatgttatcaacatatttgatttcctggactgtgatcaatcattgtaacttt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 actggtaagatgttatcaacatatttgatttcctggacggtgatcaatcattgtaacttt 440
Query: 241 tggcttactgcaaacttgagcatcctttattttctcaagatagccaacttttctaacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcttactgcaaacttgagcatcctttattttctcaagatagccaacttttctaacatt 500
Query: 301 atttttctttatctaaagtttagatctaaaaatgtggtattagtgaccctgttagtgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttttctttatctaaagtttagatctaaaaatgtggtattagtgaccctgttagtgtct 560
Query: 361 ctatttttcttgttcttaaatactgtaattataaaaatatattctgatgtgtgttttgat 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctatttttcttgttcttaaatactgtaattataaaaatattttctgatgtgtgttttgat 620
Query: 421 agtgttcaaagaaatgtgtctcaaattttcataatgtataaccatgaacaaatttgtaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgttcaaagaaatgtgtctcaaattttcataatgtataaccatgaacaaatttgtaaa 680
Query: 481 tttctttcctttactaaccctatgttcacattcataccctttgttatgtccacggtaatg 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 tttctttcctttactaaccctatgttcacattcataccttttgttatgtccacggtaatg 740
Query: 541 ttttctttgctcatcttctccctgtggagacatctgaagaatatgcagcacaccgccaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttctttgctcatcttctccctgtggagacatctgaagaatatgcagcacaccgccaaa 800
Query: 601 ggatgcagagacatcagcaccacagtgcacatcagagccctgcaaaccatcattgtgtct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggatgcagagacatcagcaccacagtgcacatcagagccctgcaaaccatcattgtgtct 860
Query: 661 gta 663
|||
Sbjct: 861 gta 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
