Query= MSMg01no182_k04.b1 MSMg01no182_k04.b1 CHROMAT_FILE:
MSMg01no182_k04.b1 PHD_FILE: MSMg01no182_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:26 2005
(670 letters)
>mm_chr6_27908840_27909908
Length = 1069
Score = 1234 bits (638), Expect = 0.0
Identities = 659/666 (98%), Gaps = 1/666 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaggagaaagaatgtaaccatgtcaccaaagtacaagtagatattctgtggccg 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggagaaagaatgtaaccatgtcaccaaagtacaagtagatattctgtggcca 263
Query: 64 tcagagacagcctttctttcttctgccagaaattgattcatttcataaacaaaacactaa 123
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tcagagacagcctctctttcttctgccagaaattgattcattttataaacaaaacactaa 323
Query: 124 gcatttcttcactagctagaccatagtaacatgaacagaggtttttgaagtaaaagacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcatttcttcactagctagaccatagtaacatgaacagaggtttttgaagtaaaagacag 383
Query: 184 tcttgctctaaaagattttaagaatcagattctaattaaagatagttggctaacaattaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttgctctaaaagattttaagaatcagattctaattaaagatagttggctaacaattaa 443
Query: 244 aagtcccagaataacactggtaatatttttatcttgcctttgccacctgatcgcaagtcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtcccagaataacactggtaatatttttatcttgcctttgccacctgatcgcaagtcc 503
Query: 304 tcagcttgtcactgtgaacacatctcacttcccaggccccagatgctattgagcgggaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagcttgtcactgtgaacacatctcacttcccaggccccagatgctattgagcgggaag 563
Query: 364 gtccccaaagccttccctgctctctcccccaataacatattcccactcctcacaatgtaa 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtccccaaagtcttccctgctctctcccccaataacatattcccactcctcacaatgtaa 623
Query: 424 ctcagacactggtttcaaggtaccaatcttggcattctccctagccattgagcattaaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcagacactggtttcaaggtaccaatcttggcattctccctagccattgagcattaaac 683
Query: 484 attaataattttatttttcttgtatccccacagaaacttagattcattctcataatggca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attaataattttatttttcttgtatccccacagaaacttagattcattctcataatggca 743
Query: 544 catgaatatttttgaagtgtcagaatttcatttaaaatgtaagccagtgtctttctctct 603
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 744 catgaatatttttgaagtgtcagaatttcatttaaaatataagccaatgtctttctctct 803
Query: 604 ccctaaaacctggaccttagacattaaaacttcataggttataccctgtaccaggactat 663
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccctaaaacctg-accttagacattaaaacttcataggttataccctgtaccaggactat 862
Query: 664 gcctgg 669
||||||
Sbjct: 863 gcctgg 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_k04.g1 MSMg01no182_k04.g1 CHROMAT_FILE:
MSMg01no182_k04.g1 PHD_FILE: MSMg01no182_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:26 2005
(232 letters)
>mm_chr6_27971157_27971788
Length = 632
Score = 441 bits (228), Expect = e-128
Identities = 231/232 (99%)
Strand = Plus / Minus
Query: 1 agtgtggtacagctgctgttggcattggtacctagcataggagggaggagaggacaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agtgtggtacagctgctgttggcattggtacctagcataggagggaggagaggacaagaa 344
Query: 61 agggctgtggagtgtgggaatttggaactttagtgatcatgtgtcagcatgctttcatag 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 343 agggctgtggagtgtgggaatttgtaactttagtgatcatgtgtcagcatgctttcatag 284
Query: 121 ctacattctcagggggttctaatctgtaaccctgtaacactgtggtagagacttggtcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctacattctcagggggttctaatctgtaaccctgtaacactgtggtagagacttggtcat 224
Query: 181 tggtatatgcatgcatgcatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tggtatatgcatgcatgcatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgt 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
