BAC Information

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BAC

Clone NameMSMg01-183I13
Chromosome6 (Build37)
Map Location 111,303,074 - 111,303,393
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik, Lmcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183I13.T7 (MSMg01no183_i13.b1)MSMg01-183I13.TJ (MSMg01no183_i13.g1)
ACCAG376093AG376094
length748740
length of high quality
(start - end)
327 (38 - 364)341 (69 - 409)
definitionCHROMAT_FILE: MSMg01no183_i13.b1 PHD_FILE: MSMg01no183_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:34 2005CHROMAT_FILE: MSMg01no183_i13.g1 PHD_FILE: MSMg01no183_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTC
ATCCATTTTACCATCCCCAATGTTATAGAAATTTGCACTAAATAAATTAA
AGAACATTGCTTTTCTACATTTTTTCGTCCTTTTCTCCTTCACACTTGAT
TCAGTGACAATAAGTACTATGAGCTACTCAGCTGTCATGTGGTACAGATT
CTGCTTGCTTCCTCTGAGCAGTCTACACTCAGCCACGAGGGCTGCTCTTC
TCCCCAGTGCCCCTGACATCCATATTGCTGTCTGCCGGTTTATGGCATTA
ATAATTCTTGCGATAAATATCTTATCCAAAGGGCAGCCAAGCTCACCCTC
TTGAACTCCAAACCTGAAACCTCTCAAAGGCAGCAGAATGATGTGTCATA
TCTGAACCACCCACATCTCTTTTAACTATGTCTCATATGGCATATTTATG
TGATCCAAATCAGCCTAAGCTCCTTTGTGAAATTTTGAACTTTAAATGAC
AAATTTTTCTCAATGGCAAGTAACTTTCCAAGGAGAGTTTACTATACACA
TATTCACATTCTTAGGATTAACTGTTTCCTAACTTTTGGTTTATAACATC
GCTGATTTCCAACTCTATCATCATGCCACGCATACTCATCCTTACTTTGC
TTTAAGACTCTCATGTTTGCATCTGATTCACTTTTATCCCCCCACTTATT
TTTTAATCGCTTACTCACATGCATGTATATTCCTTGTTTCTTTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTAGTGTTGAGTGTCTTTACGTGTCAAGGA
CTGATCACATGTGCTTTGACCACCAATTAGTGGGCCCATGAACTGACTCT
TCTGCTCTCAGTAGCTGTTATTTGCCTCTAGCTATTCACTAGATTAAGAG
CTTCGTGAGATATATCTCATTTGCATTGGCATCTCAACTGATGTTGCCAT
TGTGTAGACCTTAATTAAGCAGCCATCTTGCTGAGGTTTCATGTGTGTAG
CTTCCCTACCATGCCTAGAAAAATGCCATCTCACAGCACATTTCTAGGTC
CTCTGGTTCTTACTGTACTTCTATCCCATCTTCTGTGATGCTTCCTGATC
TTTTGGTGCCCCCCATTGCACTGTATATGTGTACACTGGAGCTGGGTACC
CCACTCACATCCATTTTATTTTTCACCAGTTGTGGCTTTCAACAGTGGTC
TCTGTCTACTGAAATAAAAATCTTTGATAAAAGGTTGACACTTACTCTTA
TTTGTGGTATTAAAGACCATCTTTTATATTGTCATTAGATTTTACTTTGT
TTCTCTCCACAGGTGTTTACTACCTTGATTCTCCTTCCTCAAGCCTTATA
GTCCTCTATTCTTGCATTTATCTTGAATTTAAATCTTATTATTATTGTGT
TTCTTCTTTTTGCCTGTCTTTTTTTTTTTATTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_i13.b1 MSMg01no183_i13.b1 CHROMAT_FILE:
MSMg01no183_i13.b1 PHD_FILE: MSMg01no183_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:34 2005
         (327 letters)



>mm_chr6_111302867_111303593
          Length = 727

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcatccattttaccatccccaatgttatagaaatttgcactaaataaattaaagaa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaattcatccattttaccatccccaatgttatagaaatttgcactaaataaattaaagaa 468

                                                                       
Query: 68  cattgcttttctacattttttcgtccttttctccttcacacttgattcagtgacaataag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cattgcttttctacattttttcgtccttttctccttcacacttgattcagtgacaataag 408

                                                                       
Query: 128 tactatgagctactcagctgtcatgtggtacagattctgcttgcttcctctgagcagtct 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tactatgagctactcagctgtcatgtggtacagattctgcttgcttcctctgagcagtct 348

                                                                       
Query: 188 acactcagccacgagggctgctcttctccccagtgcccctgacatccatattgctgtctg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acactcagccacgagggctgctcttctccccagtgcccctgacatccatattgctgtctg 288

                                                                       
Query: 248 ccggtttatggcattaataattcttgcgataaatatcttatccaaagggcagccaagctc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccggtttatggcattaataattcttgcgataaatatcttatccaaagggcagccaagctc 228

                               
Query: 308 accctcttgaactccaaacc 327
           ||||||||||||||||||||
Sbjct: 227 accctcttgaactccaaacc 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)