BAC Information

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BAC

Clone NameMSMg01-183I21
Chromosome6 (Build37)
Map Location 15,184,909 - 15,246,378
singlet/doubletdoublet
Overlap geneFoxp2
Upstream geneLOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183I21.T7 (MSMg01no183_i21.b1)MSMg01-183I21.TJ (MSMg01no183_i21.g1)
ACCAG376107AG376108
length714756
length of high quality
(start - end)		384 (33 - 416)293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no183_i21.b1 PHD_FILE: MSMg01no183_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:36 2005CHROMAT_FILE: MSMg01no183_i21.g1 PHD_FILE: MSMg01no183_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,184,909 - 15,185,276)(15,246,086 - 15,246,378)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCCCACTCATACACAGTTCCCAAACAGTGTTGAATCTTCCTGATTCCC
CATTTCCATTTCTCGATGTGATTTGTCATTATTTCTGTAAAAGGCTTAAT
TCCTGTTCTTATCATTTTATGTGTTCTAGTCGGCCTGTTAACTCCTGGCC
CAATGCTGATTAGTGGTTCTGTCCAAATGCACGGTTATGGTTGGCTTATT
TGTACTCTCTGCAAAGACTGCAAAGGTAGATCAATATTTGCACCTATATG
ATAATAAAGTTATTTATCATTATCACAATAAATTGCATTAAGTCCTGTGA
AGGATTTAATGCACTCTAATTTTATGAAAACTGTTCACCCTACTGCATTT
TTTCATACTTTATAAACCCCCAACCTTAATACGTTGAATGTTTTAATAGA
AATTGATTTGTGATTTATTGGTAAATTTTTGATTTGCTTAATATTTTCTA
TACTTACTTCCACATACCCCCCAAATTTTTTCTTTTCCATCTTTCCATCA
TTTTATTTATCTCCCTTCCATCTTTTTCTTTTATCTCCTCACCTTTTCCC
CACTTTTTTTACTCCCCCCTTCTTTCATTAAATATTTTATTATCCTTTAT
CTTCTCATTCCTTTTTTCCCCTTATTTTTTCTCCTCCCTCCTACTCTTTT
ATCCTTTTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATTTAATCTCTCTGATACAACAGATTTTGCTCATG
TCAGCACATCATAATGCTCACGGTGTTCTTGGGTTTGTCACTTAAGAATG
TGCAGTAGCACCAGGAATAGAGGATGTCAAGGTGGCAGCTTTTACAGCAA
TGTAAGTGTTAGTATCCTAAGTGTAAGAATTTATATAGTGTGCAAAGGAA
TCCTGTGTTATTCAAATGTTTAATCACTCACTAAAAAGGTTCTATGTGGA
TTGCAATAAAAGTATGTGAATAGACATGGCCACAAGACAAAACCTAAGAA
AGAAAGAATTATTTGAAAGAACACACACAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGACACACAGAGAGAGAAAAAANTTNTTTTTGGGGGGGGG
TTGCCCCCTCTTTTTTCCTCTCCTCCTTCTTTTTTTTTTTTCTCTCTTTT
CTTTCTCCTTCTCTTTCCTCTCTTTCCTCTTTCTCCTTTCTTTTCTCCCT
TTTTTCTTCCCTTTTCCCCCACCTTCTTCTTTACTCTATTCTTTTCTCTT
ACAATTATTCTTAACTATTCTTTTTTTTGCAATCTTTCCCACTCTCTTTA
TTTTCTCTTTTGTCCCCTCATGTTCTGTTATTTTTCTTACCTTCTATCTT
TATTTTTCTTTTTTCCTTACTCCTCCTCTCCCCTTTTCTTTTTTTTTTAT
ATCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_i21.b1 MSMg01no183_i21.b1 CHROMAT_FILE:
MSMg01no183_i21.b1 PHD_FILE: MSMg01no183_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:36 2005
         (384 letters)



>mm_chr6_15184693_15185476
          Length = 784

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcccactcatacacagttcccaaacagtgttgaatcttcctgattccccatttcca 76
           ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 217 gaattcccactcatacatagttcccaaacagtgttgaatcttcctgattacccatttcaa 276

                                                                       
Query: 77  tttctcgatgtgatttgtcattatttctgtaaaaggcttaattcctgttcttatcatttt 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttctcgatgtgatttgtcattatttctgtaaaaggcttaattcctgttcttatcatttt 336

                                                                       
Query: 137 atgtgttctagtcggcctgttaactcctggcccaatgctgattagtggttctgtccaaat 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atgtgttctagtcggcctgttaactcctggcccaatgctgattagtggttctgtccaaat 396

                                                                       
Query: 197 gcacggttatggttggcttatttgtactctctgcaaagactgcaaaggtagatcaatatt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcacggttatggttggcttatttgtactctctgcaaagactgcaaaggtagatcaatatt 456

                                                                       
Query: 257 tgcacctatatgataataaagttatttatcattatcacaataaattgcattaagtcctgt 316
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 tgcacctatatgataataaagttatttatcattagcacaataaattgcattaagtcctgt 516

                                                                       
Query: 317 gaaggatttaatgcactctaattttatgaaaactgttcaccctactgcattttttcatac 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaaggatttaatgcactctaattttatgaaaactgttcaccctactgcattttttcatac 576

                   
Query: 377 tttataaa 384
           ||||||||
Sbjct: 577 tttataaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_i21.g1 MSMg01no183_i21.g1 CHROMAT_FILE:
MSMg01no183_i21.g1 PHD_FILE: MSMg01no183_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:36 2005
         (293 letters)



>mm_chr6_15245886_15246578
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttaatctctctgatacaacagattttgctcatgtcagcacatcataatgctcacggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatttaatctctctgatacaacagattttgctcatgtcagcacatcataatgctcacggt 434

                                                                       
Query: 61  gttcttgggtttgtcacttaagaatgtgcagtagcaccaggaatagaggatgtcaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gttcttgggtttgtcacttaagaatgtgcagtagcaccaggaatagaggatgtcaaggtg 374

                                                                       
Query: 121 gcagcttttacagcaatgtaagtgttagtatcctaagtgtaagaatttatatagtgtgca 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 373 gcagcttttacagcaatgtaagtgttagcatcctaagtgtaagaatttatagagtgtgca 314

                                                                       
Query: 181 aaggaatcctgtgttattcaaatgtttaatcactcactaaaaaggttctatgtggattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaggaatcctgtgttattcaaatgtttaatcactcactaaaaaggttctatgtggattgc 254

                                                                
Query: 241 aataaaagtatgtgaatagacatggccacaagacaaaacctaagaaagaaaga 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aataaaagtatgtgaatagacatggccacaagacaaaacctaagaaagaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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