BAC Information

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BAC

Clone NameMSMg01-183L03
Chromosome6 (Build37)
Map Location 41,250,858 - 41,251,506
singlet/doubletsinglet
Overlap genenone
Upstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333
Downstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183L03.T7 (MSMg01no183_l03.b1)MSMg01-183L03.TJ (MSMg01no183_l03.g1)
ACCAG376206AG376207
length804734
length of high quality
(start - end)
---649 (76 - 724)
definitionCHROMAT_FILE: MSMg01no183_l03.b1 PHD_FILE: MSMg01no183_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:47 2005CHROMAT_FILE: MSMg01no183_l03.g1 PHD_FILE: MSMg01no183_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTCCCCTATTTTTTATTTTTTTACTTATCACTTTTTCCTTACATTTT
CTNCCGGCCCGNNNGGCGCCTCTAATAAATTTGGCGGCCGGCNTAATACC
GAACTTTCACTAATNAGNGNGAAGCAGGNAATCCGNNCGGGNAAAATNNT
CTCCACCNTGGAGAAGGTAAAATAACCGGNAAAAATGGGGGNCTTGGAAA
NNAAAAAGNNCCAACCCCTGGGAAAAAAAAAAAAAATGGTTTTCCAGGCC
CATTTCCCTTCCAAAATTCCAATTCCCCAAGTAAAAAATGGCCCCCAAAT
TCCAAAAAAACCTAAACCCCCCCCGGGGAAAAAAAATTTTTTTCCAACCC
CTTTCCAAACAAACCTTAAAGGTTTTTAAAGGCAAAAAATGGGGGGCTTT
TAAAAAAAAAATCCCCAAAAAAAAAAAAATTTTTTCCAAGGGGGGGTGGA
GGAAAACAAAGGGGCCTCAAAAAAAAAAATCCCCCCCCCGGGGAAAATCG
GGNCAAAAAGGGACAAAAAAAGGGGGGGGGCAAAAAAAAAAAAAAGAGTG
GGAGGGGGGAAAAACACACCCCCCCCCCCCTCCCCACCAAATTGTTTGTT
TTTTGTGGGGGGGGGGGGACCTTTTTTTTCAAAAAAAAAATTCTTTTTTT
GTGTTTTTACAAAAAAACACACCCCCACCCCCTGTGGGGGTGGGGAGAAA
AAAAAACCATACCCCTTTTTTCTTGTGGGGTGGGGGGGGGGATTCTCTTT
TTCTCTCTTTTTTTTTNTTACAAAAAAAAAAAAAAAACGGAGGGGGTGGG
GAGG
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTGTGTAGCTGCGCCAGTTATGG
CGGGGATGAGTACAGAGGTCATTAACAGTCCTCACAGGAATGTTTTCCCC
CAGAACATTTTGCTGTCCACTTGTTTCACCATTTTCAATAAGTGTCATGT
CAAAACAAATCACTAGATCATGAACTCAGACTTTTCTTCTTTGATCAGCA
TCTCTAGTGCATTTGTTGAACTCTGCTTGTTGTTGTCCATGAACAACACT
AAGATCAGACTAACTAAAAAAGTAAGCAGGTTCTGTAAAGGGTTTCCTCA
AATTAGCTCATAACAGTACATACAATCTCACACATCATTTCCTCAATACA
CTACCTCTAGGCAGATTATGTCTCAATAAATTGAGTACCAGGACTCAGTA
GCTTTGTTAGAACCATTCACAAATCTTTTACAGGAATGTTTTCTCTGAAC
TAAGTCTGCTATAATAGTGTCACTGAAAAACATCGAACATCAGAATCCCT
CTATATTTTTAATCCTGATTTGTATTCATGACAACTTGATAATGTAGTAA
TCTCTCTACTGAAGTCAATTCTGTGAACAGAAATCAGACTGTATATTATT
CAAGTCCTTCCTCAAATCTAATTAATAGACTTCAATCTCAAACTGCATGT
ATCTAGAAGGTAGGGAAGTTTTAACCTTTACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_l03.g1 MSMg01no183_l03.g1 CHROMAT_FILE:
MSMg01no183_l03.g1 PHD_FILE: MSMg01no183_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:47 2005
         (649 letters)



>mm_chr6_41250658_41251706
          Length = 1049

 Score = 1247 bits (645), Expect = 0.0
 Identities = 648/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgtgtagctgcgccagttatggcggggatgagtacagaggtcattaacagtcctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgtgtagctgcgccagttatggcggggatgagtacagaggtcattaacagtcctcac 260

                                                                       
Query: 61  aggaatgttttcccccagaacattttgctgtccacttgtttcaccattttcaataagtgt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggatgttttcccccagaacattttgctgtccacttgtttcaccattttcaataagtgt 320

                                                                       
Query: 121 catgtcaaaacaaatcactagatcatgaactcagacttttcttctttgatcagcatctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtcaaaacaaatcactagatcatgaactcagacttttcttctttgatcagcatctct 380

                                                                       
Query: 181 agtgcatttgttgaactctgcttgttgttgtccatgaacaacactaagatcagactaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgcatttgttgaactctgcttgttgttgtccatgaacaacactaagatcagactaact 440

                                                                       
Query: 241 aaaaaagtaagcaggttctgtaaagggtttcctcaaattagctcataacagtacatacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaagtaagcaggttctgtaaagggtttcctcaaattagctcataacagtacatacaa 500

                                                                       
Query: 301 tctcacacatcatttcctcaatacactacctctaggcagattatgtctcaataaattgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcacacatcatttcctcaatacactacctctaggcagattatgtctcaataaattgag 560

                                                                       
Query: 361 taccaggactcagtagctttgttagaaccattcacaaatcttttacaggaatgttttctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccaggactcagtagctttgttagaaccattcacaaatcttttacaggaatgttttctc 620

                                                                       
Query: 421 tgaactaagtctgctataatagtgtcactgaaaaacatcgaacatcagaatccctctata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaactaagtctgctataatagtgtcactgaaaaacatcgaacatcagaatccctctata 680

                                                                       
Query: 481 tttttaatcctgatttgtattcatgacaacttgataatgtagtaatctctctactgaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttaatcctgatttgtattcatgacaacttgataatgtagtaatctctctactgaagt 740

                                                                       
Query: 541 caattctgtgaacagaaatcagactgtatattattcaagtccttcctcaaatctaattaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caattctgtgaacagaaatcagactgtatattattcaagtccttcctcaaatctaattaa 800

                                                            
Query: 601 tagacttcaatctcaaactgcatgtatctagaaggtagggaagttttaa 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagacttcaatctcaaactgcatgtatctagaaggtagggaagttttaa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)