BAC Information

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BAC

Clone NameMSMg01-183L14
Chromosome6 (Build37)
Map Location 141,951,447 - 142,082,767
singlet/doubletdoublet
Overlap geneEG625716, Slco1a6
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1
Downstream geneSlco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183L14.T7 (MSMg01no183_l14.b1)MSMg01-183L14.TJ (MSMg01no183_l14.g1)
ACCAG376224AG376225
length720770
length of high quality
(start - end)		639 (52 - 690)306 (76 - 381)
definitionCHROMAT_FILE: MSMg01no183_l14.b1 PHD_FILE: MSMg01no183_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:49 2005CHROMAT_FILE: MSMg01no183_l14.g1 PHD_FILE: MSMg01no183_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:49 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(141,951,447 - 141,952,081)(142,082,479 - 142,082,767)
sequence
GGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGCCTAGGATAAAAAGTTAGTTATACACATTTTCAAAA
TAGCCCCAAATCAAGCAGTCCTTCTCAGTCATTAGCTAGTCCCTACTCAA
TCTTGACAGTAAAACTTTTAAAATGTGATGATATGAATTACAATCCCATT
CAAGAGACTGGACGAAAAATTTAAATTCCCCAGGAATACCAAGGAGGTGA
GAAGGCATGAAGTTAGAAATAGAAAATGACAAGATATGAATAAAATCTAA
GATGCCAGTGCTCAAAGAGCCACAGCAGAAAGGGGAGGGGCAAGAGAAAG
ATATCAAGAAGAGAGTACCAGGAACTTTGCAAAATATCCTGATCAAAGGC
CACTGATTGTGGTGGCAAACGACTTACTCAAACAGTCATAAGCTATGAAG
CTAGGAGAGCTTTCCTCCTCCCAGAAAGGAAATTCTGAGTCTCAAATACT
CACATGCCCATGAGGAAATGAGGCAGTGAAATTAAGAAACACCCCAGGCC
CATAGTTGCACATCCAACACCAATGATGATAGGTCTGTGCAGTTGCATTC
CGAAATAATTCACGAATACAATCAACAAAAGGTTTCCTGAAAAAAAGGAG
AATGAGAATGCTTGTTGCAGTAAAGTATCAGCAACTCTTAGTCAACAGCC
TTTCCAGCATTTAGACTCTA

AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAGGAAGAATAGGTCCACAG
TTCAGAGAACCCAATGCAGGTGTCTTGTTTTATATTCTTTGTGTTTCTCT
AAAATGTTTATCTTCTTAATTCTACTTTACTGAGTTTCTTTTTTTTCTTG
CTTTTGTCCTTTATCTCACAACAATTAATTCTAGGAAATAGTCATTTAGA
AATTACAAGGAGATGACATTTGAGAATGTGAATACTATGTCTCCTAAATG
TAGAGATATGTGAGGTAAGTATAAAGAAAGTGCATGAGTTTTGTTTTGTT
GTTTTATTTTTTGTCCCCCCCCCCCCCCCCNNTTTCCCCCTCTCCTTCCT
TTCCTTTCCCCCCCCCCCCTCGTAAAAACTATTTACCCCCCTTCCCTCCT
TTTCCCCTTTACTTTTCTTTCTCCTCCCTTATTTCTCTCTTTTCTCTTTA
TCCCCAATTCCCCCAAATTATTTTCTCTTCTTTCCCCCTTTTACATATTT
CAATCTTTCTATTAAACACATTCAACTCCTTTTTCCTTTTTACCCCTACA
CCCAATACTCCCTTCCAACATTCCCCCCTCTACTTATTTTTTCCAACACC
CCCCCTTATAACCTCCTTACTAATCTCCCCACCCCAAATCTCTTTACTCT
CGCCATTAACCACCCCCTCCCCCTATACCCAACATATTATTAACCCCTTT
TTTACATTTTATCCAACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_l14.b1 MSMg01no183_l14.b1 CHROMAT_FILE:
MSMg01no183_l14.b1 PHD_FILE: MSMg01no183_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:49 2005
         (639 letters)



>mm_chr6_141951243_141952281
          Length = 1039

 Score = 1220 bits (631), Expect = 0.0
 Identities = 634/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagcctaggataaaaagttagttatacacattttcaaaatagccccaaatcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagcctaggataaaaagttagttatacacattttcaaaatagccccaaatcaag 264

                                                                       
Query: 65  cagtccttctcagtcattagctagtccctactcaatcttgacagtaaaacttttaaaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtccttctcagtcattagctagtccctactcaatcttgacagtaaaacttttaaaatg 324

                                                                       
Query: 125 tgatgatatgaattacaatcccattcaagagactggacgaaaaatttaaattccccagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatgatatgaattacaatcccattcaagagactggacgaaaaatttaaattccccagga 384

                                                                       
Query: 185 ataccaaggaggtgagaaggcatgaagttagaaatagaaaatgacaagatatgaataaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataccaaggaggtgagaaggcatgaagttagaaatagaaaatgacaagatatgaataaaa 444

                                                                       
Query: 245 tctaagatgccagtgctcaaagagccacagcagaaaggggaggggcaagagaaagatatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaagatgccagtgctcaaagagccacagcagaaaggggaggggcaagagaaagatatc 504

                                                                       
Query: 305 aagaagagagtaccaggaactttgcaaaatatcctgatcaaaggccactgattgtggtgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaagagagtaccaggaactttgcaaaatatcctgatcaaaggccactgattgtggtgg 564

                                                                       
Query: 365 caaacgacttactcaaacagtcataagctatgaagctaggagagctttcctcctcccaga 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaaggacttactcaaacagtcataagctatgaagctaggagagctttcctcctcccaga 624

                                                                       
Query: 425 aaggaaattctgagtctcaaatactcacatgcccatgaggaaatgaggcagtgaaattaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaggaaattctgagtctcaaatactcacatgcccatgaggaaatgaggcagtgaaattaa 684

                                                                       
Query: 485 gaaacaccccaggcccatagttgcacatccaacaccaatgatgataggtctgtgcagttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaacaccccaggcccatagttgcacatccaacaccaatgatgataggtctgtgcagttg 744

                                                                       
Query: 545 cattccgaaataattcacgaatacaatcaacaaaaggtttcctgaaaaaaaggagaatga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cattccgaaataattcacgaatacaatcaacaaaaggtttcctgaaaaaaaggagaatga 804

                                              
Query: 605 gaatgcttgttgcagtaaagtatcagcaactctta 639
           |||||||||||||||||||||||||||||||||||
Sbjct: 805 gaatgcttgttgcagtaaagtatcagcaactctta 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_l14.g1 MSMg01no183_l14.g1 CHROMAT_FILE:
MSMg01no183_l14.g1 PHD_FILE: MSMg01no183_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:49 2005
         (306 letters)



>mm_chr6_142082279_142082984
          Length = 706

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaaggaagaataggtccacagttcagagaacccaatgcaggtgtcttgttttatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcagaaaggaagaataggtccacagttcagagaacccaatgcaggtgtcttgttttatat 430

                                                                       
Query: 61  tctttgtgtttctctaaaatgtttatcttcttaattctactttactgagtttcttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctttgtgtttctctaaaatgtttatcttcttaattctactttactgagtttcttttttt 370

                                                                       
Query: 121 tcttgcttttgtcctttatctcacaacaattaattctaggaaatagtcatttagaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcttgcttttgtcctttatctcacaacaattaattctaggaaatagtcatttagaaatta 310

                                                                       
Query: 181 caaggagatgacatttgagaatgtgaatactatgtctcctaaatgtagagatatgtgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caaggagatgacatttgagaatgtgaatactatgtctcctaaatgtagagatatgtgagg 250

                                                            
Query: 241 taagtataaagaaagtgcatgagttttgttttgttgttttattttttgt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taagtataaagaaagtgcatgagttttgttttgttgttttattttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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