BAC Information

Click to search

BAC

Clone NameMSMg01-183N22
Chromosome6 (Build37)
Map Location 71,549,125 - 71,697,878
singlet/doubletdoublet
Overlap geneJmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1
Upstream geneIgk, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24
Downstream geneMrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N22.T7 (MSMg01no183_n22.b1)MSMg01-183N22.TJ (MSMg01no183_n22.g1)
ACCAG376330AG376331
length697756
length of high quality
(start - end)		590 (45 - 634)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no183_n22.b1 PHD_FILE: MSMg01no183_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:00 2005CHROMAT_FILE: MSMg01no183_n22.g1 PHD_FILE: MSMg01no183_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,549,125 - 71,549,710)(71,697,594 - 71,697,878)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATCACCACCTCTCGCCAAACATGATTTCAACTTCACCTAAGTTG
TATGAGGAGGTGACAGTCCCTTCTCAGGGGTTTGTACCTGAATGACAGCA
GGAACACTTCCTGTGTCACAGCAAGCTCACCAAGAAGTCTACAGTGAATG
TGCTCCAGTCCTCAGGAGGGAGGGAGACACTCACCCTTATTCTCCTTGTT
GACATTCCCACTGGTAAGGTCAGCTAGCCAGTTTAAAGGTGAAGTGCTGG
TGGGACAGGTGGGCTTCACGCTGCTGGCTGGCTTGGAGGCTGCTTCCCCG
CACACAGCCACTGGCTCCAAAACAGGGGAACTTTGCTGGACCATGGTCCC
AAGAGTTGGTTCCCCTCCAGACAAGGATGTCTGTAAATGTAAAAGGAGAA
TTAGGTATAAGCTGAAGACTGACGTTTTCTTTCTTCCCTGAAAGCCTGCC
AGTAAAATACATAGCTCACACAAATAGTAACCTCTGGTGTAACACAGAAC
AAGGATAAGACAGAGATTTTAACTTTTAGCTTATGAGTATTACTAATGAA
AACAAAAGACATAGTAATGAACGTACTTTGGTATTTGCCCTCTAATATCA
TCCAGGAATACACATATTCCTACAGTCCCAAACACCAAGTGGCTTTA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATACTCATTAGTGAGCTGTGTGTGCACAC
CTCCAAAAATGGAGAAAGCTGACTTGATTTCAGCTTCCATGCTGAGATAA
TCAGGATATGGTGATGTCAGAGAGCCCAGGTGTAACAAAGCAAAGACTCA
CAAAAACTATGGTGCATCTTCAAGGCCCGCTGAGTTCCGAGAGTCTCAGA
TACATTAGGAGGATGCTTCTGTGAGACTCTGGCCTTTCCCACCCCTCCAC
AGGGAATGCCCTCGCTCACTATCAGCACCAGAAACTTCTGCGGGGTGGAA
TTGCTCACTTTTATTCACCCACCCCTCCCCTTCCCATGGCACAGAAAGCC
ACCTGGGCCTCTGCCCCCGCGAACCCAAACCTCCAGGTTCTACTAACCCA
TGAAGGCCTTCCAATAGGCTGGAGGAAGAAACAGGAAAACAGCAGCCCTT
GCGCCCTGCGTATCTGGGTCTCTAGATATTCATCTGCTGAATGTTTACTA
CACAGGAGAAATGGCAAAGTTACCAACAAATATAATTTCTAGCCTTCATC
GAAGCCAGGTATCATTACTGCCTTTCTCTGATTTATGCTGCACACCCTTA
TTTTTACCGAATTCACATCATCCAGTTGCATCTTTATTACAGGGTTTATC
CCCTCCTCCCCCTCACAGTGCTTTTTTTTTGATCGTCTTCTTCATACTAC
GCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n22.b1 MSMg01no183_n22.b1 CHROMAT_FILE:
MSMg01no183_n22.b1 PHD_FILE: MSMg01no183_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:00 2005
         (590 letters)



>mm_chr6_71548921_71549910
          Length = 990

 Score = 1102 bits (570), Expect = 0.0
 Identities = 582/586 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatcaccacctctcgccaaacatgatttcaacttcacctaagttgtatgagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatcaccacctctcgccaaacatgatttcaacttcacctaagttgtatgagga 264

                                                                       
Query: 65  ggtgacagtcccttctcaggggtttgtacctgaatgacagcaggaacacttcctgtgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgacagtcccttctcaggggtttgtacctgaatgacagcaggaacacttcctgtgtca 324

                                                                       
Query: 125 cagcaagctcaccaagaagtctacagtgaatgtgctccagtcctcaggagggagggagac 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 cagcaagctcaccaagaagtctacagtgaatgtgctccagtcctcaggagggagggggac 384

                                                                       
Query: 185 actcacccttattctccttgttgacattcccactggtaaggtcagctagccagtttaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcacccttattctccttgttgacattcccactggtaaggtcagctagccagtttaaag 444

                                                                       
Query: 245 gtgaagtgctggtgggacaggtgggcttcacgctgctggctggcttggaggctgcttccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgaagtgctggtgggacaggtgggcttcacgctgctggctggcttggaggctgcttccc 504

                                                                       
Query: 305 cgcacacagccactggctccaaaacaggggaactttgctggaccatggtcccaagagttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgcacacagccactggctccaaaacaggggaactttgctggaccatggtcccaagagttg 564

                                                                       
Query: 365 gttcccctccagacaaggatgtctgtaaatgtaaaaggagaattaggtataagctgaaga 424
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttttctccagacaaggatgtctgtaaatgtaaaaggagaattaggtataagctgaaga 624

                                                                       
Query: 425 ctgacgttttctttcttccctgaaagcctgccagtaaaatacatagctcacacaaatagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgacgttttctttcttccctgaaagcctgccagtaaaatacatagctcacacaaatagt 684

                                                                       
Query: 485 aacctctggtgtaacacagaacaaggataagacagagattttaacttttagcttatgagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacctctggtgtaacacagaacaaggataagacagagattttaacttttagcttatgagt 744

                                                         
Query: 545 attactaatgaaaacaaaagacatagtaatgaacgtactttggtat 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attactaatgaaaacaaaagacatagtaatgaacgtactttggtat 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_n22.g1 MSMg01no183_n22.g1 CHROMAT_FILE:
MSMg01no183_n22.g1 PHD_FILE: MSMg01no183_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:00 2005
         (285 letters)



>mm_chr6_71697394_71698078
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactcattagtgagctgtgtgtgcacacctccaaaaatggagaaagctgacttgatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atactcattagtgagctgtgtgtgcacacctccaaaaatggagaaagctgacttgatttc 426

                                                                       
Query: 61  agcttccatgctgagataatcaggatatggtgatgtcagagagcccaggtgtaacaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agcttccatgctgagataatcaggatatggtgatgtcagagagcccaggtgtaacaaagc 366

                                                                       
Query: 121 aaagactcacaaaaactatggtgcatcttcaaggcccgctgagttccgagagtctcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaagactcacaaaaactatggtgcatcttcaaggcccgctgagttccgagagtctcagat 306

                                                                       
Query: 181 acattaggaggatgcttctgtgagactctggcctttcccacccctccacagggaatgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 305 acattaggaggatgcttctgtgagactctggcctttcccacccctccacggggaatgccc 246

                                                        
Query: 241 tcgctcactatcagcaccagaaacttctgcggggtggaattgctc 285
           |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 245 tcgctcactagcagcaccagaaacttctgcggggtggagttgctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |