BAC Information

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BAC

Clone NameMSMg01-184C18
Chromosome6 (Build37)
Map Location 47,915,217 - 47,915,512
singlet/doubletsinglet
Overlap geneAI894139
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik
Downstream geneLOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184C18.T7 (MSMg01no184_c18.b1)MSMg01-184C18.TJ (MSMg01no184_c18.g1)
ACCAG376537AG376538
length7081,234
length of high quality
(start - end)
307 (66 - 372)---
definitionCHROMAT_FILE: MSMg01no184_c18.b1 PHD_FILE: MSMg01no184_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:25 2005CHROMAT_FILE: MSMg01no184_c18.g1 PHD_FILE: MSMg01no184_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAAANNNNNNNATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCACTGAAATCCACCTGCCTCTGCCCC
ATACTCACTTTAAAAACCTGTGAAAATAAAGGTATTTATGAAGACGTGTA
AAGTCCCTGTCTTGCCTTGACCCTACCAAGGTTGGTAATTGTTTGAGATA
CAGTAATGTTATTCTGTTCCAGATTGTGGCAATGGTGGTGATTACTTATT
TTCAATTTTGTGTATTTATTGAAGTTCTGAAAGAAAAAGATTGTTGGAGA
CGGGCTTGGGCAGGGCCAGCTGGATTTGCATGGAGGACACTGGGCCATAG
AAAGCCCAACCTCCTTCTATNCTAGCTCCTCCCCCCCCCCCAGGAGCACA
TAAACATGTGACATATACATACACTGACACATGCACATACATATAAAATC
TTAAGAAAGCACTCTGTGGAATGGATGGTAAGTATGTTTCCATAAGGTGG
TGACCGAGTAAACCACTTCCCATCTACAATGTTTACACATTAATTTTTAT
AAATCCTAAGGTTCATTGATTGTAAGTCATACCTTTATTTTCTACTTCTC
TAAGGGAGAAAAAGCTGCAGCCCTGTCCTCATGCTCCATACCAATGCAGG
GCGCTAAGTGCTGTATCCATGTTACCAAATTGAGCAAAAGTGTTCAGGCT
CTCCTGGG
CCAAACTAATATCATCCCTTTCCCATTTTTTTTTATGTGGTTTTTTCGTG
TCGCGGGTTTTTTATTCTTCCCTTAAGTCTTTGTGGTACGCCCCCGACCT
CGCTCCCCGCGCTATTATTCCTCACTCAACGTTGTGCCTCCACTGCTAGA
CGGTTCTCGGGGGCCGTATATTTATTCGGGCGACGTGCGCCACCCGCGTG
GCTTCCCTTTTACCTTTTATAGCTAGTAAGGTTTTGGGTCCGTGAAGGGT
GGCTGGATGGGGAAGAGGGGTTTGTTGTTTTTGTGTTCTTCACCGCCCCC
CTCTTCTTTTTGTTTCCGCGTGTTATATATTTACAAGTTCCAGTCGTCCC
TTTTTTTTTATTTTTCTTACTCCACCCCCCCCCGTATTATTTCCGGTTCT
TTGTTTCTCCCCCCATTTTTTTTACGTCCACCGTTACCTTGTTTTATCGC
CGGATCACGGTCCGTGGCTGGCGCTCGAGCGGGACGCGGGGCTTTGCGTA
TTCTTGCACGGAGGCGCGGGTAGGCTGCTCCTACTCTGCTTCTGTATCAT
TCTTCCCTCCTCGTCTTGGCGCTTGTTTTTGGCGTTAGTGTGGTGAACTG
TAGATGATATGTTAAATCTTAGGAGTTATTACGGCGTTATGTCCCGCGAG
CCTTTCCCGCGGTTTCTGCGGTTTGCCTTGTCTCATGATTCGCATCGGAC
GACATATTGACGATGCCCGATTGTTTAATTTTTTCATTTATACGTGAAGC
GGGTATGGATATGGAAAAAGGCACCGCGTTCGAGCAACATAGTGAATGGT
GTTGTTCTCGTCTGTCCGTTATGGATCATCCGTGAATGTGGTGTCTGTGA
AGTTAAAATCTACCGCCTGCTCGCTCCTACGTATAAAATACCGCAAGGTG
CTATATTATATACCGCACATCGACGATAATAAATTGATATTGTAGACGCG
AGATGTGTATTGTGTGGTCATGCTTAGCTCCGCAAGTTAATCTTTGTTTC
GTTTCGGAGCCAGATGTTGCTGTTTGGCGTCTCCGTGTTCCCTCCTGTCC
CACGACCGACTATCGCTGAGTTAGCCGCGGAGCTTGCAGGCGCGACGCTT
CCCCATTTCATTGTGTTTTTGAGGGTGGGGCGCCCGGAGCCCTTTTGTGG
AGCGCCGTTATTTGCTGATAGAGAGATTATTCGTGTATATAGTAGCAGCT
AATTCCGCGTGTTTGCGCTACATTGCCGCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_c18.b1 MSMg01no184_c18.b1 CHROMAT_FILE:
MSMg01no184_c18.b1 PHD_FILE: MSMg01no184_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:25 2005
         (307 letters)



>mm_chr6_47915013_47915719
          Length = 707

 Score =  534 bits (276), Expect = e-156
 Identities = 291/296 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaaatccacctgcctctgccccatactcactttaaaaacctgtgaaaataa 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaaatccacccgcctctgccccatactcactttaaaaacctgtgaaaataa 264

                                                                       
Query: 65  aggtatttatgaagacgtgtaaagtccctgtcttgccttgaccctaccaaggttggtaat 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtatttgtgaagacgtgtaaagtccctgtcttgccttgaccctaccaaggttggtaat 324

                                                                       
Query: 125 tgtttgagatacagtaatgttattctgttccagattgtggcaatggtggtgattacttat 184
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 325 tgtttgagatacagtaatgttattctgctccagattgtggcgatggtggtgattacttat 384

                                                                       
Query: 185 tttcaattttgtgtatttattgaagttctgaaagaaaaagattgttggagacgggcttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcaattttgtgtatttattgaagttctgaaagaaaaagattgttggagacgggcttgg 444

                                                                   
Query: 245 gcagggccagctggatttgcatggaggacactgggccatagaaagcccaacctcct 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 gcagggccagctggatttgcatggaggacactgggccatcgaaagcccaacctcct 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)