ATTATTATTAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCATATTAAAATGTAAAGATCTTAAGTTACCTT
AGTAAAAGAAACAAAATCCTACTCGAGTGACTCAAAACATGTTTCTATAG
GTCTCTTTAATTATGGCAGAAAATAGTTGTAAGATAGGGGTCAACCAGAA
ATTAAAGAAACAAAACAGGAAGTTAGAGACATCTAATGCAGTAAAATAAA
AGGAGTCCACACTACATTGCAGGATATTTGTGAGATCATAGACATATCCA
GTGTGGCTCCAGAGACACACTCACAAATGTTTAGACATCACAAGGAGACA
AATTACTGAAGAGAACCCAGATGTTTTTTTACACCCCCCCCCACCGCAGG
ACTGTGCTCGACTCATGCAGTTCTTCTATCGCCCCAAGCATCAATGAATC
TATCATAACGGCTGTCTGTCACATGTGACGAAGACAGATTGTATGTGATC
AGGGCTCCATGATGCCATGTTCCCTTCTGTTCCTCAGGGACTATGGGATA
CTGATACCCTGAACTATACTCCACAACTTCCAGACTGTGATTCCTAAAGG
AAAGGGTTATTATAACGGTGTAAAGACACGGTAAAAGGTGACAAGCTTGA
AGGAATAGTACAATTATCTGGTTCGTTGTTTGTGTTTTCGCCCTGCGAGA
GCTATTTATATTGTGAAAGAAATA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGGAATCAAAACCACAAGAA
AAAAAACAAGGAAGAAATCCCAGAAGACTATCAGAATGATGGTGAAGACT
CACTTTGACAGACATGCCACATAGAAAAATATTGGGAAGAATCTGGAAGG
TATAGATTCATGGACAGAAAGATTTACTTAGTTGAAATACAAAGAGGGAA
AAAGAATTCAATANAGCCTACTAAATTGGCATACAATGTCTAATGGTTTA
GCATCTAATTATTCCTAAAATAANGCACAAGGATATTGTNNNNGGAAATA
TTTAAAAAGATAATGGCTGCACACCTTCTCGAAATTTAAAGTGTTTTTNN
CATTCAAAAGGGATGATTTCACCCAAAACAATATGTAGAAAATTCTTTTT
TNNACCTTTCTTAATTTTGNCCCNNCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTCCCCCCCNTTTAATTTTNCCCCACCATAAATAATATT
CNNCATGGGGGGGGGGGGGGCGGNNNNAATGAAATACTNNNAAAGAAANA
CTGNAAAAAATAAAAAAAATTANTNTTTNNNNTTTNTNNNNTTTNNTATA
TTTTTTTTAATTTTATTTTTTCGATAAGCTATATATTAATAAATAATAAA
AANNNNNNNAAAGNNNNNNNNNNNNNTNNTTTNNNNNNNNNNAAAGGATC
CNTNNNNTAGGGANANNNNNAAAAAAAAAAANATTATTATTTTTTGTTGG
GGGGTGTTGT

Query= MSMg01no184_j03.b1 MSMg01no184_j03.b1 CHROMAT_FILE:
MSMg01no184_j03.b1 PHD_FILE: MSMg01no184_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:00 2005
         (310 letters)



>mm_chr6_36411099_36411808
          Length = 710

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatattaaaatgtaaagatcttaagttaccttagtaaaagaaacaaaatcctact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcatattaaaatgtaaagatcttaagttaccttagtaaaagaaacaaaatcctact 451

                                                                       
Query: 65  cgagtgactcaaaacatgtttctataggtctctttaattatggcagaaaatagttgtaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cgagtgactcaaaacatgtttctataggtctctttaattatggcagaaaatagttgtaag 391

                                                                       
Query: 125 ataggggtcaaccagaaattaaagaaacaaaacaggaagttagagacatctaatgcagta 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 390 ctaggggtcaaccagaaattaaagaaacaaaacaggaagttagagacatctaatgctgta 331

                                                                       
Query: 185 aaataaaaggagtccacactacattgcaggatatttgtgagatcatagacatatccagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaataaaaggagtccacactacattgcaggatatttgtgagatcatagacatatccagtg 271

                                                                       
Query: 245 tggctccagagacacactcacaaatgtttagacatcacaaggagacaaattactgaagag 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggctccagagacacactcacgaatgtttagacatcacaaggagacaaattactgaagag 211

                 
Query: 305 aaccca 310
           ||||||
Sbjct: 210 aaccca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_j03.g1 MSMg01no184_j03.g1 CHROMAT_FILE:
MSMg01no184_j03.g1 PHD_FILE: MSMg01no184_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:00 2005
         (181 letters)



>mm_chr6_36305390_36305970
          Length = 581

 Score =  333 bits (172), Expect = 5e-96
 Identities = 175/176 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaggaatcaaaaccacaagaaaaaaaacaaggaagaaatcccagaagactatcagaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aaacaggaatcaaaaccacaagaaaaaaagcaaggaagaaatcccagaagactatcagaa 260

                                                                       
Query: 61  tgatggtgaagactcactttgacagacatgccacatagaaaaatattgggaagaatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatggtgaagactcactttgacagacatgccacatagaaaaatattgggaagaatctgg 320

                                                                   
Query: 121 aaggtatagattcatggacagaaagatttacttagttgaaatacaaagagggaaaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggtatagattcatggacagaaagatttacttagttgaaatacaaagagggaaaa 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)