BAC Information

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BAC

Clone NameMSMg01-184J20
Chromosome6 (Build37)
Map Location 75,940,694 - 75,940,979
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184J20.T7 (MSMg01no184_j20.b1)MSMg01-184J20.TJ (MSMg01no184_j20.g1)
ACCAG376848AG376849
length743752
length of high quality
(start - end)
312 (60 - 371)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no184_j20.b1 PHD_FILE: MSMg01no184_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:03 2005CHROMAT_FILE: MSMg01no184_j20.g1 PHD_FILE: MSMg01no184_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAAAAANAACTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCATACATGAATACTGCACATATATCATTCTC
CTGTGTCTCTTTCCCCCTTTACACTTGTCCTAAATCCCCCTGTATTTATG
ACATTTTCTTTGATCATCACACACTCACACACACACACACACACACACAC
ACACACACACACACACACCACACTCCAACCTACCAAGTCTATTTAGTGCT
GTTGTTGTGTATGTGTATTTAGGCTTGATGACTTGGGACTGCTTAACCTA
TCTGGGGGCTGATTCTTGAAGAAACTGTCTTTCCCTCTTTAATCAGTAAC
AGTTTGTCAGTAGCTCTTCTCTTATATGCCACACCTCCCGAAATTCTTCG
TATCTATCCACAGCAAATATGAGTGTTCTTTAACAACATAATATATTTGA
AGTCACTACACCTGCCATTCTTGATAATGCTATAAATTTAGTGAAATTAT
ATTGAGACATTTAGTAATTAATAAGTTTCACTTTTCTTTTATACTTCTAT
GTTAATATTTCTTTTTCTAAGGAATTTCTACTGGAAAAGTCCAACAAACT
TGCAAATGCTTTATACATTTCTAAACCTGGCCTGCTAGCTCTTCTGCTAA
TATTAGTCTTAATCCTTTAAGCTCTAGTAATTAGCACTTGAAGTGCATCT
GCCTTACACTTCAATACTGCTGTAAGATGCGCTATGTGTATCT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCCAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACAACCGGAGGATCCA
GCAATACCTCTCCTGTTTATATACCCCCACCATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAACCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAATACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGTATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAATACATTCTCAAAGAAGCTCCCTCTAAATATACTCATTGTATAGT
GTTATTTACCCCCATACCTTGTGTACCTTTGAAATAAGATTTATTTTGCT
AAACACTTGTATATCTCCTCTAATAATTGAATACTGTATTTTGTTGTCTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_j20.b1 MSMg01no184_j20.b1 CHROMAT_FILE:
MSMg01no184_j20.b1 PHD_FILE: MSMg01no184_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:03 2005
         (312 letters)



>mm_chr6_75940329_75941038
          Length = 710

 Score =  470 bits (243), Expect = e-137
 Identities = 283/309 (91%), Gaps = 24/309 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatacatgaatactgcacatatatcattctcctgtgtctctttccccc-tttac 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 651 gaattccatacatgaatactgcacatatatcattctcctgtgtctctttccccctttta- 593

                                                                       
Query: 64  acttgtcctaaatccccctgtatttatgacattttctttgatcatcacacactcacacac 123
           |||||||||||||||||||||||||||||||||||||||||||||||||   |       
Sbjct: 592 acttgtcctaaatccccctgtatttatgacattttctttgatcatcaca---t------- 543

                                                                       
Query: 124 acacacacacacacacacacacacacacacacacaccacactccaacctaccaagtctat 183
                     ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 542 ----------acacacacacacacacacacacacaccacacaccaacctaccaagtctat 493

                                                                       
Query: 184 ttagtgctgttgttgtgtatgtgtatttaggcttgatgacttgggactgcttaacctatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttagtgctgttgttgtgtatgtgtatttaggcttgatgacttgggactgcttaacctatc 433

                                                                       
Query: 244 tgggggctgattcttgaagaaactgtctttccctctttaatcagtaacagtttgtcagta 303
            |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 432 agggggctgattcttgaagaaact--ctttccctctttaatcagtaacagtttgtcagta 375

                    
Query: 304 gctcttctc 312
           |||||||||
Sbjct: 374 gctcttctc 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 710
Length adjustment: 9
Effective length of query: 303
Effective length of database: 701
Effective search space:   212403
Effective search space used:   212403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)