BAC Information

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BAC

Clone NameMSMg01-184M24
Chromosome6 (Build37)
Map Location 132,332,506 - 132,332,801
singlet/doubletsinglet
Overlap genenone
Upstream geneCsda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929
Downstream geneEG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184M24.T7 (MSMg01no184_m24.b1)MSMg01-184M24.TJ (MSMg01no184_m24.g1)
ACCAG376985AG376986
length717731
length of high quality
(start - end)
307 (64 - 370)296 (75 - 370)
definitionCHROMAT_FILE: MSMg01no184_m24.b1 PHD_FILE: MSMg01no184_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:20 2005CHROMAT_FILE: MSMg01no184_m24.g1 PHD_FILE: MSMg01no184_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTGGTTTTNNNAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTTTATTTAGCTCTGAGCCACATCATTT
AATGGGGTTATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATA
TTTTAGATATTAGTCCTCTATCTGATTTAAGATAAGTAAAGATCCTTTCC
CAATCTCTTGGTGGTCTTTTTGTCTTATTGACTGTGTCTTTTACCTTGCA
GAAGCTTTGCAGTTTCTTGAGGTCCCATTTGTCAATCCTCAATCTTACAG
CACAAGCCATTGCTGTTGTATTCAGGAATTTTACCCTTGTGCCCATATCT
TCGAGGCTTTTCCCCACTTTCTCTTTTATACCCCCCCCCGCCTCTGTTTT
TTTGTGGAGTTCCATGATCCACTTAGATTTTAACAATAAACAAGGAGATA
GGAATGGATTGATTCACATTCTTCTACATGATAACAACCAGTTGTGCCAC
AACATTTGTTGAAGATGCTGTCTTTCTTCCACTGGATGGTTTTAGATCCC
TTGTCGAAGATCAAGTGACCATAGGTGTGTGAGTTCATTTCTGGGTCTTG
AATTCTATTTCATTGGCCTACTTGTCTGTCCGTATACCCGTACCATGCAG
ATTTTACCCCCCCTGTCTTGTAATAAATGTATATGCCAGGGTAGGTTATT
CCCTCTTAGGTTCATAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTCCTTCTCTTCCCAGATTTTCTT
TAGGAGAATGTTAATGTCAGTGAAACTAAAGCCTGTCTAGTCAGATGTTA
CTAATATCAGAAGGAAACATATTCATATGTTGTAACTACTTTTATTAGGA
AATTTTCTCCTGCCTGTGTTGGTTGCATATTCTGTTATGTTCTGAGCTTT
GATGTTCTTGAAATCGATCACAATAGAAGTCAGTTAGAATACAGACATAC
ACTTTAATCCCAAACAATGAAGGTAAATTTAGATTGTATAAGAAGCACCC
ATGTTTGAAAGAGTTGTCTAACTGACCACCAGATGAAGTGACAAATCAGA
AAAGATTTGGCACAATGGGATATGCCCAACACTCAAAGACAGAGGAATGG
GAACATACTAAAGAGAGCAGGCTAGAGGGAGATAAAAAGAAGGCACTTTT
ACCAGAAGAGTATTACAGACAGGATAAAGACAGAAAACAATCTAGACACA
GGTAAATGTTGAGCCAGAAAAGTAGAAGGACCCAGAGGGTTAGGACAGTT
AAAGTTAGTATGTTAGAACTGTCAAATTTAGAATGATACCAAGCAGCACA
TTTAGTGGAAAAGCTGAAACGAAGACAGAGTGAATCAATCAGCTTTGTGG
AGGGGTTTGACCCAGAGCAGCTGAGTTGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_m24.g1 MSMg01no184_m24.g1 CHROMAT_FILE:
MSMg01no184_m24.g1 PHD_FILE: MSMg01no184_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:21 2005
         (296 letters)



>mm_chr6_132332411_132333106
          Length = 696

 Score =  472 bits (244), Expect = e-137
 Identities = 283/296 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttccttctcttcccagattttctttaggagaatgttaatgtcagtgaaactaaagcct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 391 ctttccttcttttcccagattttctttaggagaatgttaatgtcagtgacagtaaagcct 332

                                                                       
Query: 61  gtctagtcagatgttactaatatcagaaggaaacatattcatatgttgtaactactttta 120
           |||||| ||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 331 gtctagccagatattactaatgttagaaggaaacatcttcatatgttgtaactactttta 272

                                                                       
Query: 121 ttaggaaattttctcctgcctgtgttggttgcatattctgttatgttctgagctttgatg 180
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtaggaaattttctcctgccagtgttggttgcatattctgttatgttctgagctttgatg 212

                                                                       
Query: 181 ttcttgaaatcgatcacaatagaagtcagttagaatacagacatacactttaatcccaaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttcttgaaatccatcacaatagaagtcagttagaatacagacatacactttaatcccaaa 152

                                                                   
Query: 241 caatgaaggtaaatttagattgtataagaagcacccatgtttgaaagagttgtcta 296
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 151 caatgaaggtaaatttagtttgtataagaagcacccatgtttgaaagagatgtcta 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)