BAC Information

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BAC

Clone NameMSMg01-185P02
Chromosome6 (Build37)
Map Location 65,772,582 - 65,772,889
singlet/doubletsinglet
Overlap genePrdm5
Upstream geneLOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160
Downstream gene4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185P02.T7 (MSMg01no185_p02.b1)MSMg01-185P02.TJ (MSMg01no185_p02.g1)
ACCAG377777AG377778
length752799
length of high quality
(start - end)
316 (62 - 377)382 (76 - 457)
definitionCHROMAT_FILE: MSMg01no185_p02.b1 PHD_FILE: MSMg01no185_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:46 2005CHROMAT_FILE: MSMg01no185_p02.g1 PHD_FILE: MSMg01no185_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGAGCTNNNGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCACTTCCTCTTAAGGAGTGAAGTTAGAG
TAGAAACAGTGCTGAGGCAAAGGATTCCAAAGGTGGCTTGACAAATGTCA
CTAAGGGAGCTAAGAATTGAAACATGTCTCTAGCCAGTAGTCAGGAATGA
AATGAGAACCATACCCTTAAGAGTCTATGGCAGTAATCTTCAACCTTTCT
AATGCTGCAACCCTCTAATACAGTTCCTAATGTAATGTTGTTATATTAGT
ATGTGACCCCAACCATAGAATTATTTTTGTTTCTACTTCATAACTATAAT
TTTACTACTGTTATGAATTGTAATCTATTATCTGCCCTTCCCCTTGTCTT
AGGTGTGAAAGGGTTGTGGCCCCTCCAGGCTGACTACTACTTGATTAGGA
GAACAAAATGCAGTCATACTGAACAAGCTTGGACACAACCAGATGGTTAC
CAGCTCCAAAAAGAGAGATGGCTCAGTAGAGAACTTGCTGTGCTTGAAGA
GGACACAGATGCAGTTCCTAGCATCCACATGGCCACTCACAACTGTCTGT
CACAACTGTCTGTAACTCCAGTTCCATGTGAACCAACAGCCTCTTCAATC
CTCTATGCAGGCCTTGGGCACTCACATGGTACACACATTTACATGTAAGT
ATTCACACATACACATAAATACACAAATGAATAAATGATTGAATGAGTGA
GT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTATCTACATGCATGTATTGG
TCTGCCTTACATTTTGCAGTTGAGCTCCAATTGTTGAGACTCCATTGAAA
GAAATGTACCAAAAAAAACTTCTAGTGGTGTGTTGCAGTTTCTTGCCACT
TCCAAGGACTTGGGCTGATTGGCAGAGTAATGTCAGCAGAGGTAAGACCC
ATAAAGGATATGTGATGTTTGGAGGGCATATAAAAAGAACTTGGTGCACA
GTGATGGAGGCTGGGCTAGGCTTGCTTATAGAGCTAGATGTGCAATGCTT
GTTGGTCTCACATCTTCATTGATCTTCACTTCACTGAGAGAAGCACAGCT
GAGAACTTCTCCTGGCATTCCTGCTGGTCCCTCTTGATGACTTGTACTGA
GGCTGGGGCCTGGCTGTCTTTGCTAGGTTGTGCCACAGCTGCTGATTCAT
GGTTGCTATCTCAATTCTACTTAACTGGACTGCTGAAGTAGCTGTAAAGG
ATTTGCAAGTGTTTGGATCTAGTTGCCCCTGATCGACCATGAACTATATT
AGCATTTACCAGAAATTATATTATAGTAATTGTATCCTAAGAACCTTTTC
TAAATACATCGCATTCCGTTGGAACCACATCTTCAACCCTTACTATTAAA
ATAATTACTTTCATCTTCCCTTTTATTTCTTGCGGTAACGTACTTACTCT
AATTATATGTTTACAATTTGTCTATATAACACTATATAATACTGTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_p02.b1 MSMg01no185_p02.b1 CHROMAT_FILE:
MSMg01no185_p02.b1 PHD_FILE: MSMg01no185_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:46 2005
         (316 letters)



>mm_chr6_65772521_65773236
          Length = 716

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacttcctcttaaggagtgaagttagagtagaaacagtgctgaggcaaaggat 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct: 369 gaattctcacttcctcttaaggagtgaagttagagtagaaatagtgctgagacagaggat 310

                                                                       
Query: 65  tccaaaggtggcttgacaaatgtcactaagggagctaagaattgaaacatgtctctagcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tccaaaggtggcttgacaaatgtcactaagggagctaagaattgaaacatgtctctagcc 250

                                                                       
Query: 125 agtagtcaggaatgaaatgagaaccatacccttaagagtctatggcagtaatcttcaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agtagtcaggaatgaaatgagaaccatacccttaagagtctatggcagtaatcttcaacc 190

                                                                       
Query: 185 tttctaatgctgcaaccctctaatacagttcctaatgtaatgttgttatattagtatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tttctaatgctgcaaccctctaatacagttcctaatgtaatgttgttatattagtatgtg 130

                                                                       
Query: 245 accccaaccatagaattatttttgtttctacttcataactataattttactactgttatg 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 129 accccaaccatagaattatttttgtttctacttcataactgtaattttactactgttatg 70

                   
Query: 305 aattgtaa 312
           ||||||||
Sbjct: 69  aattgtaa 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)