BAC Information

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BAC

Clone NameMSMg01-186D14
Chromosome6 (Build37)
Map Location 71,515,024 - 71,515,337
singlet/doubletsinglet
Overlap geneVps24
Upstream geneIgk, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103
Downstream geneJmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186D14.T7 (MSMg01no186_d14.b1)MSMg01-186D14.TJ (MSMg01no186_d14.g1)
ACCAG377975AG377976
length741747
length of high quality
(start - end)		320 (46 - 365)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no186_d14.b1 PHD_FILE: MSMg01no186_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:09 2005CHROMAT_FILE: MSMg01no186_d14.g1 PHD_FILE: MSMg01no186_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGGCTAGACTCTCTCTACCTCCCAAGTTCTGAGATTACAGGCA
TTGTGGCAACTTGTCCAACTAACAATTCCTATAAATACTTTCATGTTTGA
GAGCATGTTTTGATATGAAAGAAGGTATATATTTAAATTCTAATATAGCC
AAAATTACTTTCATGATTTTTGAATCAATTATTAATTACACTAAATGAGT
AAGCATAAACCCCGAGTCATCTTTCTTGATCTTGAGTTGGAAAGTCATGT
TTCATATGAGTCTACTGTAGGCTGCTATATAGGTATGTGATGGATGTTGG
AGGACAACTTTTTTTTTTTTCCCCCCTCCCCCCCCCATGTGGGTCCTGGG
GATCAAATCTGGNCCCCCCCCCTTATAAAAAAAAAACATCTTCTGGTGAG
AGCCTTCTCACCAGCCCCCATAATTCTATGCCCTTGGACAGATATGTGAG
CTTTTCATTCACAGCATATCCGGTCCTTAAATATGTCACTTTATTGATGT
GTTTACTTGCCTGTTTATTCCAATACTTTTGCCTTTTTATTTTCTTTCCA
CTTTTTCCCTTTTTTTCTTTCCCTTCTTTTATTCTACTTCTTAATTTTAA
TATCCCCTTTACCTACCCCTATCCTTTTTTTCCCCCCTTTTTCCATATCC
CCTTTCCTTCTCTATATTATTTACTTTTATTGCCACTTCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAGAATAGTTCCTAAAGATGA
GAACAAAATAAACCAACATAGTGCACAGTGTTGGAACATAAGGGTACTTG
CCTAACACACTTACAACGTTAGGTCCAATCCCAAGCTCGGGGATGGGGAT
GCATGCACTTGTGATCCCAGCACTGGAGTGTAGGTGGGGGAATGAAGGAT
GCTCAGATGTTTATGGTCATCCTAGGCTACCTACAGCAAGCTCCAGCCCA
GATCAATAGATTGATAGACAGAGTGATTCATTCTTAGAGCTCGAATTCAA
ACAAGTCTTTTTTTTTTTACCCCCCCCCCCCCCAGACTAGAGGGAGATAT
ATTTATATCCCACGCCCCCCAAAAAGAAAAAAATCCCTTTGAAACTGTCT
ATTTTTGTTTGCTTGCCTCTCAGACCGGTCTCACTATGTACCTCTGACCA
TCTTGAAAATCACCACGTAAATGAAGCCGGCCTTGGCCGCTCTTTACTGT
TTGTATTCAATTTTATGCCCCCCTACAACTATTATTTTATTTTACCACTT
AACGTTTTTTATGCCTATATGCAAGACCCTTTTTTATCCCAATAATACCC
ACAAATGCTAACTTTTTATTTATATTACCCCGCATTTCTTTCCAATCTTC
TTACCGTCTCCCCCTCACCAAATTACACCCAATATCGTCCTACAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_d14.b1 MSMg01no186_d14.b1 CHROMAT_FILE:
MSMg01no186_d14.b1 PHD_FILE: MSMg01no186_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:09 2005
         (320 letters)



>mm_chr6_71514749_71515468
          Length = 720

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatggctagactctctctacctcccaagttctgagattacaggcattgtggcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaattcaatggctagactctctctacctcccaagttctgagattacaggcattgtggcaa 530

                                                                       
Query: 65  cttgtccaactaacaattcctataaatactttcatgtttgagagcatgttttgatatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cttgtccaactaacaattcctataaatactttcatgtttgagagcatgttttgatatgaa 470

                                                                       
Query: 125 agaaggtatatatttaaattctaatatagccaaaattactttcatgatttttgaatcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agaaggtatatatttaaattctaatatagccaaaattactttcatgatttttgaatcaat 410

                                                                       
Query: 185 tattaattacactaaatgagtaagcataaaccccgagtcatctttcttgatcttgagttg 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tattaattacactaaatgagtgagcataaaccccgagtcatctttcttgatcttgagttg 350

                                                                       
Query: 245 gaaagtcatgtttcatatgagtctactgtaggctgctatataggtatgtgatggatgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 349 gaaagtcatgtttcatatgagtctactgtaggctgctatataggtatgtgatggatgctg 290

                         
Query: 305 gaggacaacttttt 318
           ||||||||||||||
Sbjct: 289 gaggacaacttttt 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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