BAC Information

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BAC

Clone NameMSMg01-186G24
Chromosome6 (Build37)
Map Location 29,936,002 - 30,119,659
singlet/doubletdoublet
Overlap gene1700023L04Rik, 1700080G18Rik, Nrf1
Upstream geneLep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik
Downstream geneUbe2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186G24.T7 (MSMg01no186_g24.b1)MSMg01-186G24.TJ (MSMg01no186_g24.g1)
ACCAG378122AG378123
length794744
length of high quality
(start - end)		223 (47 - 269)236 (128 - 363)
definitionCHROMAT_FILE: MSMg01no186_g24.b1 PHD_FILE: MSMg01no186_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:25 2005CHROMAT_FILE: MSMg01no186_g24.g1 PHD_FILE: MSMg01no186_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,936,002 - 29,936,221)(30,119,425 - 30,119,659)
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTACATGTAATAAAGTAAGGTTGGCCTTGGGAGGAGGGAGAGG
TGTCCACACTGCATCTAACCCCACCCTACCCTAACCCTCCTCCTGCCGGT
GCCGTCCTTCCCAGCCTCATTTTTCTTTCTAGAGTGGCTGTGGTTTTGTT
GCCCCTGTCCGCAGCCCTCAGGGACACGCTGTTCTCTTCACTGTTGAACT
TGCTGCTAATCATGCACTGGGTAAAGGGGCCTCAACTTCTTGCACAATTA
TGGTATTACCATCTCTGCTTAAGGTTTTTTCTTCCCCGAACTAGACGGAT
GTTGCTCTCCTTTTTCTCTTCCCCNGCATGCCCCTAGGTTTTTTATTTTC
TATAGAAGATGTATTTCCCCCCCCCAAAAAAAAAAAAATCTTGCGGCGGG
GGGTGCATCTTATTTTGATTGCCCTCGATTGTTTTGTTTTACATATTCTA
TGCATTTTTTCACCATACTTCACTCAATCTTTTCTATTATATCCATACTT
TTTTTATTTTTTTATAACTACCTCTTTTCTATATCATCCCCCTCCTACTT
TGTTTACCTTTTTTGGTATCTACTACATCTTCTGTCTTTTTGTTTTATTT
ATCTACTTCCGTCATTTAAGTGCTGTATTTCACACCTATCCATAAACATA
CTCTTTTACTTTGTTTCTTTATCTCATAGACAATAAGACGTCCTTTATAA
CCTATATTCTTTTTACTTCACACTTTATTCTTTTACCATCTTAC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTGAACAGTTTCAGTCAGTGAATT
ACCGAAGGGCCATAAACATAGCACCCACAGATCCGCGAGCACCTTGGAGC
TCCTCGCCCCTTTCTGCCTAGACTTCTGTTTCCAGGGGTGCCAGGGTACA
AAGACCTCCTCTGCTCCTTCCCCAGAGGGCCTGTTCCAGTACCATCTGCT
TGGCCGATTTTGGCACTAGCACATTTTTGCTTGTGTCTCTCCGCTCTGAG
CAATCATGTGTAGTGCCAATATGGGAAAAGCGGGCTGCTGCGGCCACGTT
CACCTCCCCCGGTTTCTCTTTGTCTGCGCCCCTCACTGGCTCCCTGGCCC
ATCTGGCTTACTGCTGGGCGACGAGGATACAGAAAAACCCTGGTGAACAG
CCAGATCACCTTTCACTGCCTGAGGCCAGAGTGGAGTCGGAGCTGGGCAA
TCCGAGCTGGGCCAACAGATGGAGATGCTTGCGGTGGGGGTGGGGGNTCT
CATCTTTNNTTTTATCTTCTGTGATGCCCTGTTAGCTTCCTTCCTATTAT
CGTTAGCTATATTCGGGGGATTATTTTTTCCTTCCTATATTAATTCGATT
GTTTTCTCTTTTTGGTCTACCACAATTAATATTACGACTACTTTATTTGC
TCTTTTGTATAATTACAATCTCAAGTATTCTTTCTATTACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_g24.b1 MSMg01no186_g24.b1 CHROMAT_FILE:
MSMg01no186_g24.b1 PHD_FILE: MSMg01no186_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:25 2005
         (223 letters)



>mm_chr6_29935799_29936421
          Length = 623

 Score =  418 bits (216), Expect = e-121
 Identities = 219/220 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttacatgtaataaagtaaggttggccttgggaggagggagaggtgtccacac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttacatgtaataaagtaaggttggccttgggaggagggagaggtgtccacac 263

                                                                       
Query: 64  tgcatctaaccccaccctaccctaaccctcctcctgccggtgccgtccttcccagcctca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcatctaaccccaccctaccctaaccctcctcctgccggtgccgtccttcccagcctca 323

                                                                       
Query: 124 tttttctttctagagtggctgtggttttgttgcccctgtccgcagccctcagggacacgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttctttctagagtggctgtggttttgttgcccctgtccgcagccctcagggacacgc 383

                                                   
Query: 184 tgttctcttcactgttgaacttgctgctaatcatgcactg 223
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 tgttctcttcactgttgaacttgctgctaagcatgcactg 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no186_g24.g1 MSMg01no186_g24.g1 CHROMAT_FILE:
MSMg01no186_g24.g1 PHD_FILE: MSMg01no186_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:25 2005
         (236 letters)



>mm_chr6_30119225_30119860
          Length = 636

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatccgcgagcaccttggagctcctcgcccctttctgcctagacttctgtttccaggg 60
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 435 cagatccgcgagcaccttggagctcctcacccctttctgcctagacctctgtttccaggg 376

                                                                       
Query: 61  gtgccagggtacaaagacctcctctgctccttccccagagggcctgttccagtaccatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgccagggtacaaagacctcctctgctccttccccagagggcctgttccagtaccatct 316

                                                                       
Query: 121 gcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcat 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 315 gcttggccgattttggcactagcacatttttgcttgtgtctctccgctgtgagcaatcat 256

                                                                  
Query: 181 gtgtagtgccaatatgggaaaagcgggctgctgcggccacgttcacctcccccgg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtgtagtgccaatatgggaaaagcgggctgctgcggccacgttcacctcccccgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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