BAC Information

Click to search

BAC

Clone NameMSMg01-186M22
Chromosome6 (Build37)
Map Location 75,395,575 - 75,395,890
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186M22.T7 (MSMg01no186_m22.b1)MSMg01-186M22.TJ (MSMg01no186_m22.g1)
ACCAG378373AG378374
length737787
length of high quality
(start - end)		318 (45 - 362)---
definitionCHROMAT_FILE: MSMg01no186_m22.b1 PHD_FILE: MSMg01no186_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:55 2005CHROMAT_FILE: MSMg01no186_m22.g1 PHD_FILE: MSMg01no186_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAGTGTACTTTAAATTCCCTTCCTTTTTGCAAGGTGTGCATGCA
ACTTCAGTACAATATAAATATTTTAGTGCTTTAGCTGACTGTTCTGAAAC
AAACATTCCTATATAATGACAGTTTTGTGAGTAATCCACTGTAAGATCTC
TTTATTTCTAGTACCATTCAGGAGTGTGAAGTATACATACCACATTGCTA
ACTACTCAGCACTGGAAGAGATTGCTTGAACTTAACTGAAAACTCAATGA
GAACTAGCACAACAGACACAATTATGTGGTCTCATAATTTAAGCGAACAC
AGACTCTTTTATGTTTAGAATTAAATTTTAACTTGCTACATTGTAGTAGG
TTGAATAAAATTGGCCCCCCATAGATTTTTTTTTTTGAAATGCCTAGGGT
TTTGGGGCCTTGTTGGAATAGGTATAACCTTACTGGAGGAAGTGTGTTCC
TAGAGGAGAGCTTTGAGGNTTACAAAACTCAAGCTAGGCCCAGTGGTTCC
ATTCTTCCTGCTACTTCAGGATATGAATACTGAACTTTTCTTCCTTTCTT
ATACCGCACATGTTTGCCTGCATGTCCCCTTGCTTTCGTATACATGTAAA
TGGACTTATCTTTTAAACTTTATTAATTCCCTCCTTTATGTATTTCCTTT
TAACAGCACTGGTATTTCTACTCCTTTATAACACAAA

TCAACACAGCGGGTAAGCCCGGCGGCCGCCCGGCCGTCCAATTTAGGCGA
ACTATAGAACGATCCCCCGAATTCTTTCACGAAAGTAGAAGACTTCGCAG
TACTAGACCCCAGTCTTTCTTTCCCCCACTTTTATTTTCTTTTCTTTTGT
TTTCCTTTNGNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNTTTNNTTNN
TTTNNNNTNTTNTTTNTTTTTTNTCTTCCCCTCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCTTCTTTTCTCCCCCCCCCCCCCCCCTCC
CCCCCCCCCCCNNTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCNTNTNT
TTTTTTTTTTTTTTTTTTTTTTTTTGCCCCCCCCCCAAAAAAAAAAAAAA
AAAATTTTTGGGGCGGGCCCCCCCCCACACACCAACCCCACCCACACACA
AACAAACACACACACCACCCACCAACAACCAACCCAACACAAACCAAACC
CAAAACAACAAACAACACACCCCCCCCACAACACACCACAAACCCCACCC
AACCCCCCCCAAACCCAACAAACACAACCACCCAACACAAAACACCCCCA
CCACCCAAAAACCACCCCAAACCACAACCCCCACCCCACACCCCCCCCCC
CCAACAACACAACAAACCCAACACCCACAACCACACACCAAAATAACCCC
ACACCACCAAACAACAAAAACACCAAAAAACCACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_m22.b1 MSMg01no186_m22.b1 CHROMAT_FILE:
MSMg01no186_m22.b1 PHD_FILE: MSMg01no186_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:55 2005
         (318 letters)



>mm_chr6_75395371_75396091
          Length = 721

 Score =  569 bits (294), Expect = e-166
 Identities = 310/316 (98%), Gaps = 3/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagtgtactttaaattcccttcctttttgcaaggtgtgcatgcaacttcagt 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagtgtactttaaattcccttccgttttgcaaggtgtgcatgcaacttcagt 264

                                                                       
Query: 65  acaatataaatattt--tagtgctttagctgactgttctgaaacaaacattcctatataa 122
           |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaatataaatattttatagtgttttagctgactgttctgaaacaaacattcctatataa 324

                                                                       
Query: 123 tgacagttttgtgagtaatccactgtaagatctctttatttctagtaccattcaggagtg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgacagttttgtgagtaatccactgtaagatctctttatttctagtaccattcaggagtg 384

                                                                       
Query: 183 tgaagtatac-ataccacattgctaactactcagcactggaagagattgcttgaacttaa 241
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaagtatacaataccacactgctaactactcagcactggaagagattgcttgaacttaa 444

                                                                       
Query: 242 ctgaaaactcaatgagaactagcacaacagacacaattatgtggtctcataatttaagcg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaaaactcaatgagaactagcacaacagacacaattatgtggtctcataatttaagcg 504

                           
Query: 302 aacacagactctttta 317
           ||||||||||||||||
Sbjct: 505 aacacagactctttta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 721
Length adjustment: 9
Effective length of query: 309
Effective length of database: 712
Effective search space:   220008
Effective search space used:   220008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |