Query= MSMg01no187_e19.b1 MSMg01no187_e19.b1 CHROMAT_FILE:
MSMg01no187_e19.b1 PHD_FILE: MSMg01no187_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:34 2005
(316 letters)
>mm_chr6_80522266_80522984
Length = 719
Score = 549 bits (284), Expect = e-161
Identities = 304/312 (97%), Gaps = 3/312 (0%)
Strand = Plus / Minus
Query: 5 gaattctacagcctgagtgatctccactatccactatgtgtttgtaagaccaacaaaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctacagcctgagtgatctccactatccactatgtgtttgtaagaccaacaaaaat 457
Query: 65 tgaacaaatactaccccagaaactaataaagcccctctgggagtgactctctgggagctt 124
||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 456 tgaacaaatactaacccagaaactaataaatcccctctgggagcgactctctgggagctt 397
Query: 125 gggttgtggggacccacttctgaacctcgatgcactacatggttccctgaacaacatggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gggttgtggggacccacttctgaacctcgatgcactacatggttccctgaacaacatggg 337
Query: 185 ctat---tagatttaatgaaacttgcatgttaacatgttccactgcttgaagatgcatta 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctattagtagatttaatgaaacttgcatgttaacatgttccactgcttgaagatgcatta 277
Query: 242 acaaattaaaaacaactggttttgattatcaaacataattactattggtgcatagtgatt 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 276 acaaattaaaaacaactggttttgattatcaaacataattactattggtgcatagtaatt 217
Query: 302 gttttttctttt 313
||||| ||||||
Sbjct: 216 gttttatctttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 719
Length adjustment: 9
Effective length of query: 307
Effective length of database: 710
Effective search space: 217970
Effective search space used: 217970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_e19.g1 MSMg01no187_e19.g1 CHROMAT_FILE:
MSMg01no187_e19.g1 PHD_FILE: MSMg01no187_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:34 2005
(287 letters)
>mm_chr6_80505669_80506355
Length = 687
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Plus
Query: 1 tctgtgaagtagaatcaaaggattagagcatttcttttccactgaccactgtaagcataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgaagtagaatcaaaggattagagcatttcttttccactgaccactgtaagcataa 260
Query: 61 tgtaaatacatggctttcattttgtctccttgagttagatttaactgctgtgatattccc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tgtaaatacatggctttcattttgtctccttgagttagatttaactgttgtgatattccc 320
Query: 121 taatgtgccagccaaatgtacaatccgtgaatacatttttgttgccattttggtggtcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgtgccagccaaatgtacaatccgtgaatacatttttgttgccattttggtggtcat 380
Query: 181 ggaaacgtccattgtagatagcactttctcagatcttagaaggactagtgctgattttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaacgtccattgtagatagcactttctcagatcttagaaggactagtgctgattttgt 440
Query: 241 ggctgaagagctggcccagtgaggatagtccttgcctaacaagcaaa 287
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 ggctgaagagctggcccagtgagtatagtccttgcctaacaagcaaa 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
