BAC Information

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BAC

Clone NameMSMg01-188E20
Chromosome6 (Build37)
Map Location 60,400,170 - 60,400,428
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik
Downstream geneLOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188E20.T7 (MSMg01no188_e20.b1)MSMg01-188E20.TJ (MSMg01no188_e20.g1)
ACCAG379364AG379365
length758793
length of high quality
(start - end)
267 (65 - 331)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no188_e20.b1 PHD_FILE: MSMg01no188_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:55 2005CHROMAT_FILE: MSMg01no188_e20.g1 PHD_FILE: MSMg01no188_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGCAATAATANNAAAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCACCACTTTTCATCTGATATCTCAGAC
TGGTATCTCAAGTTTAAGATGCTGACAATTATTGGCTTCTCGCTCCGCTG
ATGAAAAATCCATTAATCTTGCACTCTGCTTGAAGCAGAACTATAATTAC
ATTTAACATGGATGGTAAAATATATTTGTTGTAGGAAGTCATTGAGTCTT
GGGCTCTTTCTTATTTCAACAACACTAATCCCACCCAAGTCAGAAAATCA
TGAATGAATATTTCATGTTGTACAATGGAAGAGACTGGGTAATTTTATGG
CCTTAAACACAGCTCTAACTTACCTTTTTTTTTTGTCCACCACCCCCCCT
GGTATACAATTCCTTTCTTTCCAAGAACAGGCAACGCGAATCATAGAAAA
CTAATATAGAATCTTGTTTAACGTGCATCTGTCATATATTACTTGTGAGA
AAGGGAAAGAATACAGTAATATCTTACACAACACAGCACCATTTACATTA
TTCTGGCTTCTCTTAGGGCTCTTTAAAGGATACAGAAAATGATATAATGA
ATTGCATGACGAAAATGATTCACAGTTGTTCCTAACATTTATATCCCTAA
GTTGTTTACTGATACAGTTAAAGTGACATATGACAGTTCATCATTACCAT
TCTCCGAAACCTTACTACTTACAACTATTTTAAAGGCAACCTCATTTTAA
ATTATCGC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTCTCCCTGTTAAATAACACAGA
AGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGA
GGAGCTAGAGAAAGTACTCAAGGAGCTAAAGGGGTCTGCAACCCTATAGG
TGGAACAACATTATGAACTAACCAGTACCCCAGAGCTCTTAACTCTAGCT
GCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCC
CATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC
AAAAAGGGGGAGTGTTTGTTTATGCCACCCCCCCCCNNTNTNNTTNTNTN
NTTCTTTTTCCCTTTTTCCCCCCCCCTAAAAAAAAAAAAAAATTTTTTTT
GTGGTGGGCGTCCTTCTTTTTCTCTCCCCTTTCCTCCTATTCTCTCACTT
ACCTTCTTCCTTTCCCCTTTTCTTTCACCCTTCATTCATATCTCTTCCCC
CCCCTTACATATTCTATTTTTTTTTTTGTGCGCCGCTTCCTCCCCTTTTT
TCTTTCTATTCCTTTCCTCTTTTTTCCCCCCTTTTTCCCCTTTCCTTCCA
TTTCATCCGTCCTAACATTATTTCCTTTCTTTTCACATTTTCCACTACCC
CCCCTCCTTCCTTTGTTCTCCTTTTTCATCCTTTCTCCCCCTTTCCTTCC
CCTCCCTCTCCTTTTCCTTTCCTATCTTTTCCTTTACCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_e20.b1 MSMg01no188_e20.b1 CHROMAT_FILE:
MSMg01no188_e20.b1 PHD_FILE: MSMg01no188_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:55 2005
         (267 letters)



>mm_chr6_60399966_60400628
          Length = 663

 Score =  350 bits (181), Expect = e-101
 Identities = 243/267 (91%), Gaps = 12/267 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccacttttcatctgatatctcagactggtatctcaagtttaagatgctgacaa 64
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 205 gaattcaccacttttcatctgatatctcagtctggtatctcaagttgaagatgctgacaa 264

                                                                       
Query: 65  ttattggcttctcgctccgctgatgaaaaatccattaatcttgcactctgcttgaagcag 124
           |||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 ttattggcttcttggtcctctgatgaaaaatccattaatcttgcaatctgcttgaagcag 324

                                                                       
Query: 125 aactataattacatttaacatggatggtaaaatatatttgttgtaggaagtcattgagtc 184
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 325 aactatagttacatttaacatggatggtaaaatatatttgttgtaggaagtcattga--c 382

                                                                       
Query: 185 ---ttgggctctttcttatttcaacaacac-taatcccacccaagtcagaaaatcatgaa 240
              |||| |||||| ||| |||||||| |  |||||| |   ||||||||||||||||| 
Sbjct: 383 ccattgg-ctctttgttacttcaacaa-aggtaatcc-a---aagtcagaaaatcatgag 436

                                      
Query: 241 tgaatatttcatgttgtacaatggaag 267
           ||||||||||||| |||||||||||||
Sbjct: 437 tgaatatttcatgatgtacaatggaag 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 663
Length adjustment: 9
Effective length of query: 258
Effective length of database: 654
Effective search space:   168732
Effective search space used:   168732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)