BAC Information

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BAC

Clone NameMSMg01-189G03
Chromosome6 (Build37)
Map Location 35,146,642 - 35,280,465
singlet/doubletdoublet
Overlap geneNup205, 1810058I24Rik, Slc13a4, BC064033
Upstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4
Downstream gene1700065J11Rik, Mtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189G03.T7 (MSMg01no189_g03.b1)MSMg01-189G03.TJ (MSMg01no189_g03.g1)
ACCAG380089AG380090
length739723
length of high quality
(start - end)
316 (60 - 375)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no189_g03.b1 PHD_FILE: MSMg01no189_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:21 2005CHROMAT_FILE: MSMg01no189_g03.g1 PHD_FILE: MSMg01no189_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,280,158 - 35,280,465)(35,146,642 - 35,146,933)
sequence
CCCCCNCCNTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCCTCGGTTCTTCTTTACAGTTTGGAGTATA
AGGAACAGATCCCAAAGTGCACTGTGTGAACCCCACAAAGTTGGCAGAGA
TCCGGTCCGTCATGTCCAGTCAGTGCCGCCATTAGCGGGCCTAACCCTTC
CTCCACTGACACGATGCTCTGGCAAGCAGAGCTTCCGGCCTCACAGACAC
ATGGAAGCTGAATTGCCCAAAGGATTCTTGCACCTGGCAGAGAATACTCT
GCGCACATGGACATTGCAGGAGGACATTCTGGCCTGGCCTGGCCTGACAC
AAGACTACACGTATTACTGAGTCATTTATGATGGCCCCCCCACCGGGATG
AATGGATGCGTCGTCTGCCTTGGAGACCAGCACTCTGTGACTTCATCTGT
GCTTCTGTTGTCAAACCAAATTACCTCACTTATGGATTTAAAATAGAATC
CAGACCAAAGGTGCTGGCTGTGTAGACAGGGAGGGAGGATTCAGTAGACG
CGACTCTGGGTACCAAGCCAGAAGAGAAGGCTGGAAGCTGACACAGCGAT
TCCCACTGTTCAAAACCTGTGGCTTCTTTCTACATTCTTTTGCTCATTCA
TTCAACACTTTACCGACAGACTGAATGGGTCTATTCCCTTGGGCATGTCT
GACTTCCGTGGACCATGTCACCAAACCCCGTTGCCCGGT
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATACTAATGTGCTTTTTTATTTC
TGTAATGTTCTTGCTATGAACATTTCTCTATAGTTTTTGCTTATTCTCTG
CAGATTGGTGAACTGTATAAAAAAAATCCATTTCATCTGGAGCTTGCGCT
AGAATACTGGTGTCCCTCAGAGCCTCTGCAGACTCCCACAGTCATGGGCT
CTTACCTGGGAGTAGCTCATCAGCGGCCTCCTCAGCGCCAGGTGAGGCTT
TTTGGCTTTTTATTTTTATTCTCTGAGTTAGTCATTGAATTTTGAACACA
GACGCTAAATTATTTATTTATCTTCCACCCACCACAAATTGAATCCATCA
TTTAAATTCAGGCCATTTTGAATTTTATATAAACTTTTATTACATACTAG
ACTTGTGACAAATTGTTAGAAGCAGAAACGCTTGTGGTCTCATTCTTTCT
TGAGATTTAATTTTTGCTATAGTCATCCTCTATAGGTGTGACAATAACCA
GTATGCATGATGCTGACCAAGTTGGGGAAGATGAGGTTTCAGCACTGAAG
AAAACTTAGGGGCCATAATTGATAATACGCTGTCTTGGAATCTCCATATG
TGTAGACAAGTGCCCTTTTTCTGTCCTGAATTCTCTATACTATAGGGTAT
AGAAGTAAATAAAAGATTGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_g03.b1 MSMg01no189_g03.b1 CHROMAT_FILE:
MSMg01no189_g03.b1 PHD_FILE: MSMg01no189_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:21 2005
         (316 letters)



>mm_chr6_35279951_35280666
          Length = 716

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctcctcggttcttctttacagtttggagtataaggaacagatcccaaagtgcactgtg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttctcctcggttcttctttacagtttggagtataaggaacagatcccaaagtgcactgtg 456

                                                                       
Query: 68  tgaaccccacaaagttggcagagatccggtccgtcatgtccagtcagtgccgccattagc 127
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 455 tgaaccccacaaagttggcagagatccggtccgtcatgttcagtcagtgccgccattagc 396

                                                                       
Query: 128 gggcctaacccttcctccactgacacgatgctctggcaagcagagcttccggcctcacag 187
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 395 gggcctaaccctttctccactgacacgctgctctggcaagcagagcttccggcctcacag 336

                                                                       
Query: 188 acacatggaagctgaattgcccaaaggattcttgcacctggcagagaatactctgcgcac 247
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 335 acacatggaagctgaattgcccaaaggattcttgcgcctggcagagaatactctgcgcac 276

                                                                       
Query: 248 atggacattgcaggaggacattctggcctggcctggcctgacacaagactacacgtatta 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 275 atggacattgcaggaggacattctggcctggcctggcctgacacaagactacacgtatca 216

                   
Query: 308 ctgagtca 315
           ||||||||
Sbjct: 215 ctgagtca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_g03.g1 MSMg01no189_g03.g1 CHROMAT_FILE:
MSMg01no189_g03.g1 PHD_FILE: MSMg01no189_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:21 2005
         (292 letters)



>mm_chr6_35146442_35147133
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatactaatgtgcttttttatttctgtaatgttcttgctatgaacatttctctatagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactaatgtgcttttttatttctgtaatgttcttgctatgaacatttctctatagttt 260

                                                                       
Query: 61  ttgcttattctctgcagattggtgaactgtataaaaaaaatccatttcatctggagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcttattctctgcagattggtgaactgtataaaaaaaatccatttcatctggagcttg 320

                                                                       
Query: 121 cgctagaatactggtgtccctcagagcctctgcagactcccacagtcatgggctcttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgctagaatactggtgtccctcagagcctctgcagactcccacagtcatgggctcttacc 380

                                                                       
Query: 181 tgggagtagctcatcagcggcctcctcagcgccaggtgaggctttttggctttttatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggagtagctcatcagcggcctcctcagcgccaggtgaggctttttggctttttatttt 440

                                                               
Query: 241 tattctctgagttagtcattgaattttgaacacagacgctaaattatttatt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattctctgagttagtcattgaattttgaacacagacgctaaattatttatt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)