BAC Information

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BAC

Clone NameMSMg01-189G18
Chromosome6 (Build37)
Map Location 141,789,223 - 141,789,537
singlet/doubletsinglet
Overlap geneSlco1a4
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927
Downstream geneLOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189G18.T7 (MSMg01no189_g18.b1)MSMg01-189G18.TJ (MSMg01no189_g18.g1)
ACCAG380114AG380115
length721742
length of high quality
(start - end)
319 (46 - 364)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no189_g18.b1 PHD_FILE: MSMg01no189_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:24 2005CHROMAT_FILE: MSMg01no189_g18.g1 PHD_FILE: MSMg01no189_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCATTTGATAATTCAAAGAAAAGGTAAGAAATTTTTGTGGCCC
ATTTAGAAGGTGGCTGTGGCAACCTGGGTGAATTTATGTTCCCAAGGAGA
GAGAAATGATTCTCTCCCACATCTGTGTTTGTGAGGTTGATGGCTCTCCA
CTTCTAGTCATTAGGGAATATGGGGAATCTTCCCTGTGTTTGAGTTTTGT
CAGACACAATTCTTAAGAAGAGTGGATGAACTCCAACTCCTCATTTGCTG
TCATAACCTGGGATAAGACAGTACAAAGTGTAAAAGATGGAAAAAACTGA
AAACTGTCCCCAGATTTTATTAAATGACGCCCGCACAAAACTCAACATAA
TTTCAGCTTGACAATTTTCTGTGCAAGTTACTGTCGAGTTTATTCATAGT
TTTTACTTTCTTTCAGGTAAAATTGTCTTTAATGTATTCAAATCAAAATA
GCAAAGAAAGTGCTCACTAAGTTGCCCATGCTGGTCCTCACCTCACTCTG
TAGTCCAGACTGACTTTGATATTGCAGTCTTCCTCTCCTGGCCTTCTAGA
AGCTGTGGACAGAGGCTCTGTGCTACCATGTCCCACATGTTCTTTCAACT
CTCAAACACTGAAAAAAGAAATCCTTTTTTGAAATGAAGCTTTCTATTAA
ACAAAAAGTTGAATTTTTGGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGAGGGCAAGTGGGAAGGTATGGAGCTA
AGAATATTGATAAGGGCACACTTTTTCAGACAGTAGATAGTAGCACCCAG
CAATTGTGGCAAAAGGCAAGTTGAAAATGAACAACTGTGTGTCTGTGTCT
TTTATCCCTGTATTCAAGGGAATCTGGGTATAGCCTGTTTCCAGAGTTTA
GGCCTATCCCAGGAGCTTGGGTGGGATAGTGAAAGCTGCATGTAACAAGT
TGCCTGCAGGGAACATACAGGAGCTGGACCTAGACCCCTACACATTTGTA
GCAAATGTTTTTTTTACTGCCCACCCGCATTGAAAGGTGGTAGAAGCATT
AAAAAAATATGGGGCCTATAGGAAAAATTTAGGTCCATGACGATAAGCCC
TTGAAAGAGATACTCGTCCCCTGGCAACCCCCAACACCTTTCCCTCTGTA
TACGTCTATGTATATATCTTGAGCCATAGTTCTGAAACAATAGAAAAGCT
TGTTTTTCCTTTAAAAAAAATCTGCGTTTTATCAAACACAAAATAAGATG
ATTTCTGTATCAGTTACTTTTCACTGCTGCAATAAAATACCACAAATAAC
ACATATGAATAGGCATTTATTTTGACTTATGAATCCAGAGGGACTGAAGT
CCCTCATGGCAAGTAGGTATGACAGATAGCACCACGCATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_g18.b1 MSMg01no189_g18.b1 CHROMAT_FILE:
MSMg01no189_g18.b1 PHD_FILE: MSMg01no189_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:24 2005
         (319 letters)



>mm_chr6_141789019_141789737
          Length = 719

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatcatttgataattcaaagaaaaggtaagaaatttttgtggcccatttagaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctatcatttgataattcaaagaaaaggtaagaaatttttgtggcccatttagaag 460

                                                                       
Query: 65  gtggctgtggcaacctgggtgaatttatgttcccaaggagagagaaatgattctctccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtggctgtggcaacctgggtgaatttatgttcccaaggagagagaaatgattctctccca 400

                                                                       
Query: 125 catctgtgtttgtgaggttgatggctctccacttctagtcattagggaatatggggaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 catctgtgtttgtgaggttgatggctctccacttctagtcattagggaatatggggaatc 340

                                                                       
Query: 185 ttccctgtgtttgagttttgtcagacacaattcttaagaagagtggatgaactccaactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttccctgtgtttgagttttgtcagacacaattcttaagaagagtggatgaactccaactc 280

                                                                       
Query: 245 ctcatttgctgtcataacctgggataagacagtacaaagtgtaaaagatggaaaaaactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctcatttgctgtcataacctgggataagacagtacaaagtgtaaaagatggaaaaaactg 220

                          
Query: 305 aaaactgtccccaga 319
           |||||||||||||||
Sbjct: 219 aaaactgtccccaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)