BAC Information

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BAC

Clone NameMSMg01-189G21
Chromosome6 (Build37)
Map Location 94,373,009 - 94,373,319
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665831, Magi1, LOC100043262, LOC665856
Downstream geneSlc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189G21.T7 (MSMg01no189_g21.b1)MSMg01-189G21.TJ (MSMg01no189_g21.g1)
ACCAG380119
length739719
length of high quality
(start - end)
319 (61 - 379)---
definitionCHROMAT_FILE: MSMg01no189_g21.b1 PHD_FILE: MSMg01no189_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:25 2005CHROMAT_FILE: MSMg01no189_g21.g1 PHD_FILE: MSMg01no189_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCAANCNTTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCATTACCACTAAGCAAGCTCTACAGAACATA
TTTGAAGAAACCCTTCAGACTGAGGACAAAGGCAAAGACATCCATGAGGC
CACGAGAAAGAATAGATCATGATAGAATAATAGTTAGGATAGGAATAGGG
GGGCTGGAGGGATGGCTCACTGGTTAAGAGCACTGGCTGCTTTTCCAGAG
ATCTTGACTTCAATTCCCAGCAACCACATGGTAGCTCATAACCATCTGTG
ATGGGATCTGACGCCCTCTTCTGGTGTGTCTGATGACACTCCAGCTAAGT
ATACTCATATGCCAAAAAAAAAAAATATCATTATTTCGCCGACATCCCCA
CATACCTTTCAATAGTAACTCTGAATATTAGAATATTAATGCTTACAAAT
CTCCAGTCAAAGACGCAGATGAACAAATAAGAAAAGAAAGCAGGAATCAT
ATAATTACTTTGCCCATGAAAGACATTTCACTCTAAGAGACTTTTGGTGG
AAGGATAAAAACAGGTATTCCTAGAAAAAAGACTTAGGGAACAAGCAGGT
TCTAATATCTGGCAAAATGGATTTCAAATAAAAAGTAATCAGAAGAAATA
AAGAAGACCACTATATACTGATTAACATATCAAACCATCAAACGGGTCTG
ATAATTCTAAACCTATATCCACCCACCGTGGGTGCATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCAGGTAGGACTCCAAATGTGCGACCCGTCTC
GTTGGATATAAGTAGCTCGTGGAGAAACAGCCTTCCAAGTAGTATTTGGT
AAATGGTCACAGAGTAATGGAAGACGTTCCCCCACTTTGTGCCGGGGTTC
GTCCTTTGAATTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_g21.b1 MSMg01no189_g21.b1 CHROMAT_FILE:
MSMg01no189_g21.b1 PHD_FILE: MSMg01no189_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:25 2005
         (319 letters)



>mm_chr6_94372806_94373524
          Length = 719

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaccactaagcaagctctacagaacatatttgaagaaacccttcagactga 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaccacaaagcaagctctacagaacatatttgaagaaacccttcagactga 263

                                                                       
Query: 64  ggacaaaggcaaagacatccatgaggccacgagaaagaatagatcatgatagaataatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggacaaaggcaaagacatccatgaggccacgagaaagaatagatcatgatagaataatag 323

                                                                       
Query: 124 ttaggataggaataggggggctggagggatggctcactggttaagagcactggctgcttt 183
           ||| |||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ttaagataggaata-ggggtctggagagatggctcactggttaagagcactggctgcttt 382

                                                                       
Query: 184 tccagagatcttgacttcaattcccagcaaccacatggtagctcataaccatctgtgatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccagagatcttgacttcaattcccagcaaccacatggtagctcataaccatctgtgatg 442

                                                                       
Query: 244 ggatctgacgccctcttctggtgtgtctgatgacactccagctaagtatactcatatgcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggatctgacgccctcttctggtgtgtctgatgacactccagctaagtatactcatatgcc 502

                       
Query: 304 aaaaaaaaaaaa 315
           ||||||||||||
Sbjct: 503 aaaaaaaaaaaa 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)