BAC Information

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BAC

Clone NameMSMg01-189I13
Chromosome6 (Build37)
Map Location 99,734,495 - 99,734,728
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665979, Foxp1, Eif4e3, Gpr27, Prok2, LOC384466
Downstream geneLOC626503, LOC100043703, Rybp, Shq1, LOC625221, BC049816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189I13.T7 (MSMg01no189_i13.b1)MSMg01-189I13.TJ (MSMg01no189_i13.g1)
ACCAG380189AG380190
length742713
length of high quality
(start - end)
318 (58 - 375)247 (126 - 372)
definitionCHROMAT_FILE: MSMg01no189_i13.b1 PHD_FILE: MSMg01no189_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:32 2005CHROMAT_FILE: MSMg01no189_i13.g1 PHD_FILE: MSMg01no189_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCNCCGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCTGGGGAGACCAATACACACATCTACTCGCCCC
AGAAAGGGAACCCACAGCAGATCAAAGTTACAGCCGCACCAAAGTCCAGC
TCGGTGAACCACCATGAGGTTACATGGGATACAGGGGAGGGATTAGTTAC
GAGGAGCAGGGATGAGTTAAAAGCAGCTGCATCACTAAGAAGCCCACCTC
AACACAGGTGAAAAGTCACAAAAGCTGCAGCCCCGGAGCTCTCTGCATAG
CTCGATGGCTGCTGCACAGGCTCTTTCCCTCTCTCCCTCTCTCCCTCTCT
CCCCACACCCTCCTCTGCCGTTTGTTGTTACACNNTGCTGNCCAGGTCAA
AGTCTGACATTACCTGACAACCCTGAGCTCAGTGTTACCACTTTTCAGCC
CAGCTTCCTCTTCTCTGGGGTATCCTGGACCCCACACCTGAGGATGCCAT
GGGAGTCCTGCACCTGAGACTCCTGGGATGCCTCCCCATGCTAATGAGGC
ATCTCGGTGCCTTAGCCCTCAGCCAATGGATGACCTTTGTCCACCCTGGA
GATTAAAACCCCATTCCCCACAACTGTATAACCTTGATTCACCCTGAATG
GATGGTCAGAGAAGGCCTTAGCCTAAGAGAGCTGTAACACTATTGGAGAA
GCCCCCCACCCGCTACCCGCAGGCACTCGCCTCCCAGCTGGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCGTGGATATTGCACACAAACCGTGCCAA
GCCCTCACTCAGCACTTCAGCCGGTAGACTCCGAATGAAATGAGGAAATA
ATCACGGGCTAAGATGATGCCTAATTAAAGCTAAATTTAGCCAGCTCTGG
CTTTTCAGAGTTGTCATGAAATCCATTTCAGCTCAGACAATAGTAACGGC
AAGCCAAGAGATAACGAGGAAGGGGCTTTCGTTTGAAAGGTGGGGTGTCA
TCAATATGGTAATTAAGGTTTTTAAAATAAAAGGCACGATTCTCAGACCA
AATGAAATGTTTTTTTCTTTGCCCGCCCTGCTCAGTAACTTCACTGTGGT
TTTCTGGCTCTCCAGCTTCAGAAATAAAAGAGGAGAGAAGATAAATGCCA
GGCAGAACTGTGGCTCTTGCCATTTCTGGGGTTCTCATGATGTGGGACTG
AGAAGGCCAGGTTGACTCCATGACAGGCTTGGAATTGGCAGTTCAGGACT
GGGCAAGTTCAGCCTAGTCCAGGCTAGTCCAGGCCTCAGAAGCTGCCCGC
CAGCTGGCATGAGGCAGAAGTTTCCAGACTTCCTCAGCTACTTCCTCACC
CTCAGTTTCTAATCCTCATGCCCTGTAATGGAAAGTCCCAAGAGATGGAG
TAGGACAAAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_i13.g1 MSMg01no189_i13.g1 CHROMAT_FILE:
MSMg01no189_i13.g1 PHD_FILE: MSMg01no189_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:32 2005
         (247 letters)



>mm_chr6_99734295_99734941
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactccgaatgaaatgaggaaataatcacgggctaagatgatgcctaattaaagctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactccgaatgaaatgaggaaataatcacgggctaagatgatgcctaattaaagctaaa 260

                                                                       
Query: 61  tttagccagctctggcttttcagagttgtcatgaaatccatttcagctcagacaatagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagccagctctggcttttcagagttgtcatgaaatccatttcagctcagacaatagta 320

                                                                       
Query: 121 acggcaagccaagagataacgaggaaggggctttcgtttgaaaggtggggtgtcatcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acggcaagccaagagataacgaggaaggggctttcgtttgaaaggtggggtgtcatcaat 380

                                                                 
Query: 181 atggtaattaaggtttttaaaataaaaggcacgattctcagaccaaatgaaatg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtaattaaggtttttaaaataaaaggcacgattctcagaccaaatgaaatg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)