BAC Information

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BAC

Clone NameMSMg01-189P05
Chromosome6 (Build37)
Map Location 120,188,850 - 120,189,145
singlet/doubletsinglet
Overlap geneB4galnt3
Upstream geneCacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2
Downstream geneCcdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189P05.T7 (MSMg01no189_p05.b1)MSMg01-189P05.TJ (MSMg01no189_p05.g1)
ACCAG380460AG380461
length779750
length of high quality
(start - end)
300 (46 - 345)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no189_p05.b1 PHD_FILE: MSMg01no189_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:03 2005CHROMAT_FILE: MSMg01no189_p05.g1 PHD_FILE: MSMg01no189_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGAAAGAGATTGTTGAGAGACTATAACAGTATTTTGAAAGACA
CTTCTGGGTTTATAATCCGATTAAGCCTGGTTCTGCTTGGCCCATACCTT
TCTCTTACCCAGGAGGGAGGGCTGAGCCAATGTTAATTATACTTAGCCCA
TTCTTGCTAAAACTGCATTCAGTTCACTTGCTCCAGGGGTCTTTGTGCTC
TATAGTGTTAGATTATTTTCTTTAAATTGTACTTAATAATTTGTTTGTTT
GTTTATTGAGATCTATTTATTTTTATTATATGTGTATGAGTGTTTTNTNN
GNNNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCNNNNNNNTTNTNNNT
TTTTTCTTTTTTTTTTCTTCCCCCCCATAAAAAAAAAAATCCCCTATTTG
CCGCGGGTCCGACTCTTTTTGCCCACTCCTTTTTTTTTATTTTAATTCCC
CTCCCCACCTCCTATATCCTTCCTCATATACTTCCTTACACTCCTCGTTT
TCCCTACCCATCCCATCCTCCTTCCTATTTTACTTTTATCCCCCCTCCTC
TCCTTCCCCCTTTTCCCTCCCCCCCCTTTTCATCCTTACTATTTTTTCCC
TCCCCCTTTTTTTTACCCCTCCCCTTTCTTTCCCCTCCCATTACTCTTTT
TCTACCTCCCTATTTTTTTTCCTTACCCCCTTTAAATTCCTATTTTTTCT
TTCATTCCCCCTTACTTTTCCTCCCCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGGCCAGGTTGGCCTCAA
ACTCACGAAGATCCACCTGCCTTTGCCTCCCTAGTGCTGAGACTAAAGAC
CATGATTTCTATCTTCAAATAATTATAAAGATGTGCGTTATAGCTCAGAA
TGTGACCATCTTGGTGAGTTCTCCACGGGACCTTGAGCAGAGAATGTGAT
CCTGCTGTTGTAATGAAGTTGTCATCTGTAGATGTCGGTCCTACCCAGCT
GCTGCTGGTGGTGGGCTTAACTCCCCCCCACCCGGCCTATCTCAAGCTCC
CTGCTGAATATGTTTATTTCTGACCCACCACTCTCCAGGATCCCCTATAA
TATGAGCACCATCCACTTCCCTTTGAATTTCTGTGAGTTTTGCTTCATAT
AGTTTGATGTATATGGAGGGTTGTTCTCCTCACCGGTTCCATTGGCACCC
TCCTTCTCATGACCCCGTATTATTTTTCACTTCCCACGTTATCAGCCTTT
TATCTTAGACATAATTTTTCACGTTTATACTGCCTCCCTCTTTCTCCGCC
TTTTGTTGTTTTGTCCTTCACATAATGATGCCTCATTACCCCTTTTTTTT
TCCCTTTCTTTTATACTTTTCCCTGCCTTCCCATCTCTTTTATTTCTTCT
TTCCCGCCTCATTCCCTTTCCCCCCCTCTTTTTTTTTTTTTTTTTCCCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_p05.b1 MSMg01no189_p05.b1 CHROMAT_FILE:
MSMg01no189_p05.b1 PHD_FILE: MSMg01no189_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:03 2005
         (300 letters)



>mm_chr6_120188646_120189345
          Length = 700

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagggaaagagattgttgagagactataacagtattttgaaagacacttctgggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattcagggaaagagattgttgagagactataacagtattttgaaagacacttctgggt 441

                                                                       
Query: 65  ttataatccgattaagcctggttctgcttggcccatacctttctcttacccaggagggag 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttataatctgattaagcctggttctgcttggcccatacctttctcttacccaggagggag 381

                                                                       
Query: 125 ggctgagccaatgttaattatacttagcccattcttgctaaaactgcattcagttcactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggctgagccaatgttaattatacttagcccattcttgctaaaactgcattcagttcactt 321

                                                                       
Query: 185 gctccaggggtctttgtgctctatagtgttagattattttctttaaattgtacttaataa 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 320 gctccaggggtctttgtgctctgtagtgttagattattttctttaaattgtacataataa 261

                                                                   
Query: 245 tttgtttgtttgtttattgagatctatttatttttattatatgtgtatgagtgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttgtttgtttgtttattgagatctatttatttttattatatgtgtatgagtgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)