BAC Information

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BAC

Clone NameMSMg01-190C07
Chromosome6 (Build37)
Map Location 53,265,823 - 53,266,134
singlet/doubletsinglet
Overlap genenone
Upstream geneEvx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190C07.T7 (MSMg01no190_c07.b1)MSMg01-190C07.TJ (MSMg01no190_c07.g1)
ACCAG380587AG380588
length741821
length of high quality
(start - end)
315 (60 - 374)239 (133 - 371)
definitionCHROMAT_FILE: MSMg01no190_c07.b1 PHD_FILE: MSMg01no190_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005CHROMAT_FILE: MSMg01no190_c07.g1 PHD_FILE: MSMg01no190_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTNNCCCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTTAAAAAAATAAAGAGGTGAGGATTATTTC
ATTCAAAAGCAACAATGACATCAAGAGAAAAAACGGGATGTTACTTATAT
AGTCTAAGGTATTTTTGTATTATCTCTCTGATCTTCTCAATAATTTAGGG
AGGTAGGCAACATAAGTGTGAGCCTAACTTAGAGAGGCAAGCTCAGGAAA
GGGAAGTTTCAAAATTAAAGCTCTAGCAACCGGCTGACACTGTTTCTCAG
AGCTTCAAGCCATGTAGCCAGTCACCAGGGACTCTGAGAGGAGAAGATCT
CTCTTGGCATTTGTGTAAGAGCTTTTATTTGCCTGCCCGCTGGAGAGCGC
CCTTGGCTCCTTCCACCTGCCTTCAGTGCGTGCCGCTTCCAACCAAATGC
AACGTTCTCGTGTATGCATGTTCAGGTTTTGCCAAAAGTAAATGGCTTCC
TAGTTTTAAAAATGAAGTAAGGAACCGGGCAGTGATGGTGCATGCTTTTA
ATCCCAGCACTTGCGGGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCA
GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATTCGGAGAAAT
CTGTCTCAAAAACAAAACAAAACAAAACAAAACAAACAAACAAACAAACA
AACAAACAAATTGAAGTAGGGAGAAACACATTGGAAGAGAA
NTTTTCCCCTTTTCCTTTNTTTTTCTATTCTCTTCTTTTTTTCTTNNNTN
NNNCCATCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCAGGAACTGTGGAG
GAATGCTCACCTCTGATTTGCTTTCATGGCTTGCTTATATTGCTTTCTAT
GAAACTGAGGACTGCTTACTGGGCTATGCCACCACCCACTTGGTCTGGGC
CCTCCCGCATTATTCAACAAGCAAGAAAATGTTCCACAGATATGCCTATG
TGCCTACAGGCCTGAGGAAGAAAATTCTTCAACTGAAGTTTTCTCTTCCC
AGGGGCCTCTAGTATGTATCAATGAGAAAAACCAACAATAAACTTAGTGA
TGCCTTCTGTTACTTTTTATTTTTGCCCCCCCCCCCCCGGAATTCCTTGT
AGAAACTTCCATCTGTCTTCCCTCTATGGAAAAACCCTGTATTCCCCCCA
GAAAAATCGCTTTTTTCTTTAGTCTTCTAGTAACCTTATCCCTTTTGATG
GACTCGGTCCCAAGACCCCCTGATTTTTGGCCCCCTTTGTGGATACATCT
TTGGATTGTCCCCCACTCGAAAACCTGTTAAAAAAATACCCATCCCAAGT
TCTCTTCATCCTAATTATTTTTTCTATTCCCCTTTTTCCCTTACTAAGAA
TTTTTTCTACCTTTCTCTCACCTCAACACACATGAAAGACGACTTTTTTT
TTTTTTATAAACTATCACCCTTCCCCCCCCCCCTCCCCTCCACNAATTAA
ATATATTCCTCATTCCACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_c07.b1 MSMg01no190_c07.b1 CHROMAT_FILE:
MSMg01no190_c07.b1 PHD_FILE: MSMg01no190_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:17 2005
         (315 letters)



>mm_chr6_53265619_53266335
          Length = 717

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttt-aaaaaaataaagaggtgaggattatttcattcaaaagcaacaatgacatc 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctttaaaaaaaataaagaggtgaggattatttcattcaaaagcaacaatgacatc 457

                                                                       
Query: 64  aagag-aaaaaacgggatgttacttatatagtctaaggtatttttgtattatctctctga 122
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aagagaaaaaaacgggatgttacttatatagtctaaggtatttttgtattatctctctga 397

                                                                       
Query: 123 tcttctcaataatttagggaggtaggcaacataagtgtgagcctaacttagagaggcaag 182
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 396 tcttctcaataatttagggaggtaggcaacataagtgtgagcctaacttacagaggcaag 337

                                                                       
Query: 183 ctcaggaaagggaagtttcaaaattaaagctctagcaaccggctgacactgtttctcaga 242
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctcaggaaagggaagttttgaaattaaagctctagcaaccggctgacactgtttctcaga 277

                                                                       
Query: 243 gcttcaagccatgtagccagtcaccagggactctgagaggagaagatctctcttggcatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 276 gcttcaagccatgtagccagtcaccagggactctgagaggagaagatatctcttggcatt 217

                       
Query: 303 tgtgtaagagct 314
           ||||||||||||
Sbjct: 216 tgtgtaagagct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 717
Length adjustment: 9
Effective length of query: 306
Effective length of database: 708
Effective search space:   216648
Effective search space used:   216648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)