BAC Information

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BAC

Clone NameMSMg01-190F15
Chromosome6 (Build37)
Map Location 32,420,726 - 32,421,034
singlet/doubletsinglet
Overlap genePlxna4
Upstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190F15.T7 (MSMg01no190_f15.b1)MSMg01-190F15.TJ (MSMg01no190_f15.g1)
ACCAG380730AG380731
length710736
length of high quality
(start - end)		313 (45 - 357)---
definitionCHROMAT_FILE: MSMg01no190_f15.b1 PHD_FILE: MSMg01no190_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:34 2005CHROMAT_FILE: MSMg01no190_f15.g1 PHD_FILE: MSMg01no190_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTTGGCTGTATTTAAGGTACATTTTCATTGGGGTTGGGGGTGCA
CAGGAACACACGCAGGATAAATATTATTTTAATATGGTAGAGTTTCAGGC
TATTTATTTTTAACTTTTAAAAATTAATGGCACGTGTGTGAATTTGTGTG
GGTGCATGCACACAGGGTGTGGGTACACATGCCTGTGCACACACAGAGGC
CAGGGGACGCTGTCGGGAGTCCTCTTGGCTGACATGTAGATGTTTGCAGG
CTACCTGGCTTCTGTCACAGATTCTGAGATCTAAACTCCAGGCCACATAA
CTGTACTGAAGGCACTCTCACAGGAGGAAGCAGTTCTTTAGCCTCTCAGG
TTATTTTGTTCCATGGTTTGTTCGTTTGTTTGTTTGGGGTTGTTGTTGTT
GATTTAAANAAANAANATATATAATGTTAATATTATTTTCAAAAATTGTT
TGACTTCATATAAAATTTTTTTTTCCATTTTTAAATCATATTGATTTATT
TAATGCATAAAATCCACACATCGCCCCTTTTTCACACCTCTTTTCATTCG
TAAATTAACCCGATTATATATTTCTCCCCCCACCGTGTTTTTTCTTTTTC
CCCCCGCTCCCTGTCCGTTCCCCTCCTTATTTTCCTCTCCGCTCGGAGAA
CTGTCGACTT

CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGCCTATCTTATAGGTCACTGGCACTGCC
GAGGATTTGATGCTGGTGTATAGTATGAGAACAAATCTATGATAATGTAC
AAAACATCCAGTGCCCCGTTGCTCTGTGAAACCTGTATCAACTTGTGCTC
TGCTTTCACTTGATGATGGACGGATGCTAACATGTAAGCCTCCATGACTC
TTTCCTCCTCAATTGCTTTTGTTCACATTGTCTTATTACATCAAAAAAAC
GCGTAGAATGCTCTGGAAAAAAAGTAATCAATCTGATGGCCGTACAATTA
TAACAGTTATCTGTTTATTGATCCCCCCCCCCCACACATTCTAGACTATG
CGTGCCCTCTGTACTTTCATTACAGATTATTCAGGACGTAATTATCCAGT
TACAGGTACATGAAATGTCACCCTAATTAGTGGTCATAAACATTTTAAAT
ATCACCCAATTTGACAGGAGGATAATGTGACAAAATATGTGTAAATCCCA
AGTTTCTTAGACTGACATTTCTCGTACATACTAATTTCTACTGAAATGCT
TTTATGTGATGTACGAAGAATTTCCTGGTTAGATGTGAGATCAGATGATT
AGAGCAGCTGTATGTAAAATATGGTAAACAGTGGATTATACTAATTCTTA
ACAACAAGTCATGTTAATCCGCTCAAATTCATTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_f15.b1 MSMg01no190_f15.b1 CHROMAT_FILE:
MSMg01no190_f15.b1 PHD_FILE: MSMg01no190_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:34 2005
         (313 letters)



>mm_chr6_32420523_32421235
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctttggctgtatttaaggtacattttcattggggttgggggtgcacaggaac 63
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctgtggctgtatttaaggtacattttcattggggttgggggtgcacaggaac 263

                                                                       
Query: 64  acacgcaggataaatattattttaatatggtagagtttcaggctatttatttttaacttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acacgcaggataaatattattttaatatggtagagtttcaggctatttatttttaacttt 323

                                                                       
Query: 124 taaaaattaatggcacgtgtgtgaatttgtgtgggtgcatgcacacagggtgtgggtaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaaattaatggcacgtgtgtgaatttgtgtgggtgcatgcacacagggtgtgggtaca 383

                                                                       
Query: 184 catgcctgtgcacacacagaggccaggggacgctgtcgggagtcctcttggctgacatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catgcctgtgcacacacagaggccaggggacgctgtcgggagtcctcttggctgacatgt 443

                                                                       
Query: 244 agatgtttgcaggctacctggcttctgtcacagattctgagatctaaactccaggccaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatgtttgcaggctacctggcttctgtcacagattctgagatctaaactccaggccaca 503

                    
Query: 304 taactgtac 312
           |||||||||
Sbjct: 504 taactgtac 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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