BAC Information

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BAC

Clone NameMSMg01-190I19
Chromosome6 (Build37)
Map Location 36,754,268 - 36,851,233
singlet/doubletdoublet
Overlap genePtn, Dgki
Upstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, LOC100039514
Downstream geneEG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I19.T7 (MSMg01no190_i19.b1)MSMg01-190I19.TJ (MSMg01no190_i19.g1)
ACCAG380859AG380860
length757696
length of high quality
(start - end)		321 (55 - 375)234 (77 - 310)
definitionCHROMAT_FILE: MSMg01no190_i19.b1 PHD_FILE: MSMg01no190_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:50 2005CHROMAT_FILE: MSMg01no190_i19.g1 PHD_FILE: MSMg01no190_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,850,919 - 36,851,233)(36,754,268 - 36,754,501)
sequence
NNNTAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAACATCTTTTGTTTTGAAATCTTTGTGTCTGTATT
AGTTGATATATAAGGTAAACTTTCAAAAAAACGTGCTAGTTAATGGCATG
ATCTTCTACCTAAAACAGTGGATGTTTCTCTGGAGCTTTTCCAACATGTC
TAGAAATCTCTATCCAGAAGAAATTGTTCTAGTCCTATGGTCCTTGCAGC
CTTTCTAGGTCCTCTTCTGCAGTGTCCCTGAGCCTTCAGTTGCATCCCAG
TTGTACTTCAGGGGCTGTGCACCCCGTGGTCACTCACCCTTTGTAGTTTG
AATAATTGTGGACCATGTTCTTCTTTTTGTGATCCCCGCCCACTTCCCAG
CAGCCTCTACTGATGTGCGCTCTTTGCCTGCATCTTTCCCATCATCCTTA
CCTTTGCACGTTTTGATGACAGTGGCTGCTCTTAACAGGAGTAAGAGCAT
GTGTTTCTCAGCTTCCATTCCTTCATGAGTGGTGATTCAGAGCATTTTTC
CTGTTTTCTTTTAGTCATCCGTGTCTTTTGAGAAATGCCAATTATCATCT
CTCACTTGGGTGATTCTCTTCTTTTTATATTATTTTTCACTGCACATTGC
AAGTTTTGAACCTCATCAGATAACAGTCTGCAAATACTTGCTCACATTCC
GAATGTTACCTCTTCATTTGGTTGATCGTTTCCTTTGGTGTGCAGAACTT
TTTTGAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTTACTCTCAAAGTTATCAA
GTCAGAAACCATGTTGATGTAAAGGATGAAGGTAGGTGGGGTATAGAAGA
CTAAACCCTGCAGACCAACAGGATCCCTCAAATGAAAGCAGGAAAGTGAT
ACTTGGAGACATTTGCTCTGGAAGCCTGAGGAGATCGGTAATAATACATG
ATGTTTATTGGAAGGTAGGAGGAATGGGTAAAGGACATTGTGGGACTGGA
TCATGATTAGCATTTATTATGGATAGTCTTCAGGGTTGCCTATCTTTTAT
TTGGGTCACTCCCAAAACGAAGCCCCTATGATGTGTTTTTGNCCATNAGA
TNTTGTAAGGCAAAAAAAAAAAAAAAAACCGGGCTTGGCTTGCGAGGGAC
TAGTGCTGCGACTGAGTGGAGCTACTACAGATTGGGATTCATTAGCTGAA
TCCAATCTGATGGTTAATGAGTTATTCTCTGACAAGGGTGATGGAGAAAC
TGATAGTTTGGTATTGATTCTTGAGCATTCCCTGACACATCAGTTGCACT
CGCCTCTTTTTTAGTGTTTTAACTTAGTGGCTTCCGATGTATGACTGCTT
ACTTTATTCTCTCTGGTGTCCTTTTATGTATTTCGCCTCTATGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i19.b1 MSMg01no190_i19.b1 CHROMAT_FILE:
MSMg01no190_i19.b1 PHD_FILE: MSMg01no190_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:50 2005
         (321 letters)



>mm_chr6_36850900_36851620
          Length = 721

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaacatcttttgttttgaaatctttgtgtctgtattagttgatatataaggtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaattcaaacatcttttgttttgaaatctttgtgtctgtattagttgatatataaggtaa 275

                                                                       
Query: 65  actttcaaaaaaacgtgctagttaatggcatgatcttctacctaaaacagtggatgtttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actttcaaaaaaacgtgctagttaatggcatgatcttctacctaaaacagtggatgtttc 215

                                                                       
Query: 125 tctggagcttttccaacatgtctagaaatctctatccagaagaaattgttctagtcctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tctggagcttttccaacatgtctagaaatctctatccagaagaaattgttctagtcctat 155

                                                                       
Query: 185 ggtccttgcagcctttctaggtcctcttctgcagtgtccctgagccttcagttgcatccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ggtccttgcagcctttctaggtcctcttctgcagtgtccctgagccttcagttgcatccc 95

                                                                       
Query: 245 agttgtacttcaggggctgtgcaccccgtggtcactcaccctttgtagtttgaataattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 94  agttgtacttcaggggctgtgcaccccgtggtcactcaccctttgtagtttaaataattg 35

                          
Query: 305 tggaccatgttcttc 319
           |||||||||||||||
Sbjct: 34  tggaccatgttcttc 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no190_i19.g1 MSMg01no190_i19.g1 CHROMAT_FILE:
MSMg01no190_i19.g1 PHD_FILE: MSMg01no190_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:50 2005
         (234 letters)



>mm_chr6_36754068_36754701
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctttactctcaaagttatcaagtcagaaaccatgttgatgtaaaggatgaaggtagg 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tctctttactctcgaagttatcaagtcagaaaccatgttgatgtaaaggatgaagggagg 260

                                                                       
Query: 61  tggggtatagaagactaaaccctgcagaccaacaggatccctcaaatgaaagcaggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggtatagaagactaaaccctgcagaccaacaggatccctcaaatgaaagcaggaaag 320

                                                                       
Query: 121 tgatacttggagacatttgctctggaagcctgaggagatcggtaataatacatgatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatacttggagacatttgctctggaagcctgaggagatcggtaataatacatgatgttt 380

                                                                 
Query: 181 attggaaggtaggaggaatgggtaaaggacattgtgggactggatcatgattag 234
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 attggaaggtaggaggaatgggtaaaggacattgtgggattggatcatgattag 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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