BAC Information

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BAC

Clone NameMSMg01-191O19
Chromosome6 (Build37)
Map Location 91,442,334 - 91,442,614
singlet/doubletsinglet
Overlap geneXpc
Upstream geneAldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43
Downstream geneLsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191O19.T7 (MSMg01no191_o19.b1)MSMg01-191O19.TJ (MSMg01no191_o19.g1)
ACCAG381770AG381771
length831718
length of high quality
(start - end)
67 (193 - 259)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no191_o19.b1 PHD_FILE: MSMg01no191_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:42 2005CHROMAT_FILE: MSMg01no191_o19.g1 PHD_FILE: MSMg01no191_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAATGGAAAAGAATAAAGAGATATGGGGGAGGGGGGGGGGCCCCNN
NNNCCCTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGTTCTTGAGGTTAAGGACTCGGTGAAAAAGACCAGTGT
TATTCCCTCCTTAAGGACTTTCCGCTCACCCACAGGAGAAGGGGAGGCGC
GTTATTTATTGGCCACATTAAATGTGATCTTTGGCTATAAAACTGGTACC
AGTATCTTTGCTAAGATAGAAATGAAGGGGTGGAGAGAGCTCTGAAGACC
ATGTCTTTTTATACCATCCAAGGGGGAGAGGAACAAGGTAGGCCGGAGAT
TTCTGTATCAAAGGGAAAACATTTTTTTTTTTTGGTTAAAAGAAGACGGC
AGAAGAGAAGAAAATTTTGGGGTGGGCCTTTAAAACAGGAGGCCCCAAGG
GAGAGGGGAGGGNGGNNGGGGGGGGGGGGGGGGAAAAAAANNAAAANNNA
AAAAGGNNNNNNGGNNNNNGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGNNNGGGGGGNNGGGGGGGGGAGGGGGGGGGGNGGGGGGGGGAAAAAAG
AAGAAAAAAAGGAGAAAGGAAAAGGGGAAAAAGGGGGGGAAAAAGGAGGG
GAGAAAGAAAGAAGAAGAAAAAGAAAAAAAAGAGGGGGGGAAAAAAAGGG
AGAAAAAAAGGAGAAGAAAAGGANAAAAAGAAGAAGAAGAGAGGGGAAAA
GAGAGAAGAAGGGGAAAAAAAAAAATGATTTTTTTATTATAAGTTGGTGT
GGGAGAATAAAGTGAATAGGAAAATTAATGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACAAACAATGTAGCCATCAGT
TCTGTGGGGACATTAATACAGATGAGCTCCCTGAGCTGGCCACCCACCCA
GCCCCTCCTCCTCCCTTATTCAGAAGCCAATGGTCCTTTGTGAGTATTTG
GGGCCCCGATGGACATTCCTGGTCAGCCAAAGATAGATGCTAGCCATGCA
GGAGGCAGGCTTATGGGAGCCTGTACCTCTTCCTTCACAGGACCTGCCTG
AGTGCTAGAGAACTCCCAACCCTAGTCCCCACTTCACCCAGGAGCACTCA
GGAGCCATGGTTTTCTGCCCATGCCTTGGTCCCCGGCCTGTGAGTTGCAA
AAGGGGTCAGTGCTTCAGTTTAGCGGGACCAGGACACTCAGTGCTCTGAG
TCTACTGCTCCTTGCAAGAAGCTAGGGCTGATCAGGGGATAAGACTGACT
TTAAACCCACAGTCAAATCTAAAAAGTGTGTGCCACCAGCCTCAGCCTCC
CCAACTGCCACCCAAGTCCCCTCACGCACACTGGATGGCAATAGCCTCCA
TGGAAATCGAAGCCAGTGATGGCCTGCACGCAGTCGATGCCCAGCTTGCG
TGCCACCCGGTTCAGGTTAGGCAGGGTCATCTGGACACAGCCGACGGGCA
TCATGCTGGGCAGGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_o19.g1 MSMg01no191_o19.g1 CHROMAT_FILE:
MSMg01no191_o19.g1 PHD_FILE: MSMg01no191_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:42 2005
         (281 letters)



>mm_chr6_91442134_91442814
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcacaaacaatgtagccatcagttctgtggggacattaatacagatgagctccctgagc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacagacaatgtagccatcagttctgtggggacattaatacagatgagctccctgagc 260

                                                                       
Query: 61  tggccacccacccagcccctcctcctcccttattcagaagccaatggtcctttgtgagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccacccacccagcccctcctcctcccttattcagaagccaatggtcctttgtgagta 320

                                                                       
Query: 121 tttggggccccgatggacattcctggtcagccaaagatagatgctagccatgcaggaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggggccccgatggacattcctggtcagccaaagatagatgctagccatgcaggaggc 380

                                                                       
Query: 181 aggcttatgggagcctgtacctcttccttcacaggacctgcctgagtgctagagaactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcttatgggagcctgtacctcttccttcacaggacctgcctgagtgctagagaactcc 440

                                                    
Query: 241 caaccctagtccccacttcacccaggagcactcaggagcca 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaccctagtccccacttcacccaggagcactcaggagcca 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)