BAC Information

Click to search

BAC

Clone NameMSMg01-192C17
Chromosome6 (Build37)
Map Location 14,335,372 - 14,335,793
singlet/doubletsinglet
Overlap genenone
Upstream gene1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513
Downstream geneLOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192C17.T7 (MSMg01no192_c17.b1)MSMg01-192C17.TJ (MSMg01no192_c17.g1)
ACCAG381935AG381936
length1,2861,236
length of high quality
(start - end)		415 (43 - 457)616 (84 - 699)
definitionCHROMAT_FILE: MSMg01no192_c17.b1 PHD_FILE: MSMg01no192_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:11 2005CHROMAT_FILE: MSMg01no192_c17.g1 PHD_FILE: MSMg01no192_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAGGCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACACACACAGAGCAAGGCATACACACACATACATGTGAATACACACAG
AGCAAGACAAACACAAATGCAAATAGACACACACATACATAACAAATCAC
ACAGAGAGAAAACATTCATGCATAACTATGTGGGGCCCCAAGTCTCATTC
ATCTTAGAGTTCTGGGGGTTATAACAGTAATTTTGGTTGTCTTTATGGGT
CCCCCCTTCAGCTTAAATCATTGATCCTAGAAAAAAAGGACTCAGAGCCT
ATAACTTTAGGTAAACAAGTATAGGCCTGACCATGAACATTTCTGGGCCA
ATTAGCTAAGAAGCCCTGCTGGTGAGAGACTAAGCCTGCTTGGCCTTTGT
CTCAGGTCAGACAGGTATGGAAGAAGCTAAAAGTTTGCCATTATCATTAT
TTATCTGTGCTCGCCCCCCCATCTGTCTGCTTGTAAGGGTTATGACTAGC
TCGAAATCTGTCACAAGCACAGCTAACATAAAGAATAACCCTTCTGCTTT
AGATGAAAAAAAAAAGTAATTCAGTTCTAAGTTGATGTTATTTCCTTAAA
ATGACCAAGACATATTTGCCTGTTCAGTTTTAGTCTAGAAGTGTATTCAC
AGGGTTCATTCCAGAGACAGCCTAATAAGCCAGGGATTCAGCTGAAACCC
AGTGCATCCTTCAGTCCTCCTGCTGTCTGTGACATTCCACATCACCTCTA
AATGAATAAAAGGCAAAATAAATTGCCACCTTCTAATATTATGCCCAGTT
CCCATGCCTAATAATTGTGAACACACTGGATATTTTGAAAAAATGCAATG
AGTAGCCAAATCTATGTTTATTTGCAAATTGAAATTCTTAATTGGGTATT
TATTTTGAAGTTTTTATTCTTATTGTGTTTGGAAATATTTCATGTTTATT
CGTTTTTTTCTAATTAAAATTACTCTACCTCTCTTCCCCCCATTATATTA
TCGTACAACATTTTTGTGATCTTATATTGCTATCTATACTCCCCTTGTTT
TTTTCTTCTTTTACTTCTTTATTTTATATATTTCTTTTCTTTTTATTCTT
CTCTTCTATATTCCTTTTATCATTTCTTTTTTTCTTCTCTTCTCTATTTA
TCACTCTTCAGTTCTATATTTTTTTTCACATTTTCCTTGATTATTTCAAT
TCTTTTTATCTTTTTTACTATCCGTTTATTATATATTCTACTTTTTCATA
TCGCAATTACACTCGGTACTTTTATTCTCGCTAATA

CACTTATTNNNNNAATCATGGGAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTATACCCCTAAACCCCTTAC
CCCATAAAAACCCCTAGCTCCTGAGCCTCATGGCCAATATCCATTATCTC
CTGTGTGGGATGCATGTAGGTCTGGAGCTCTGTCATTAAACTACCTCGTG
TAATTACATCAAGATGGTCTATTCGTGATTTTTTGGGTGCACACCAAATC
TGGTTTCCCCACTAGGTTCTATCACTTTCATTGTGTCCCATAAGTTTGGA
TATGTTATGGCTTCATTTTCATTAAATACTAAGAAGTCCTTAATTTTTTT
CTTTATTTCTTCCTTGACCAAGTTATCATTGAATAGAGTGTTGTTCAGCT
TCCATGTGAACGTTGGCTTTCTGTTATTTATGTTGTTAATGAACATCAGC
CTTAGTTCATGGTGATCTGATAGGATGCATTGATTATTTCAGTCTTCTTG
TGTCAGTTGAGTCCTGTTTTGTGGGCAATTGCTTGGTCAGTTTTGGAGAA
GGTACCATGGGGTGCTGAGAAAAAGGTATATCCTTTTGTTTTAGGATAAA
ATAGTCTATAGAAATCTGTTAAATCCATTTGTTTCATAACTTGTGTTAGT
TTTACTGTGTCTCTGTTTAGTTTCTGTTTCCAGGATCTTTCCAGTGTTAG
AGTGGGTTCTTTAAGTCTCCCATTCTCAATGTGTGCAGTGCAATGTGTGT
TTTGAGCTTTAGTAAAGTTTCTTTTAGAATGTGGATGCCCTTACATTTGG
AGCATAGATGTTCAGAATTAAGATTTCAGCTTGGTAGATTTTACCTTTGT
TGAGCATGAAAAGCCCCTCCTTTGCTTTTTTTATAATTTTTTTTAAATTT
TATTTTTTCTTTATTTATTTGTGTCCTTCGTTTTTTTTTGTAATAATTTC
TTTTTTTTTTTTTCTTTTTATTATTTTTACTTTTTTATTGTTCTTATACA
TTTTCCTTTTTATTTTTTATATTCCTTTCCATTATATTTTTCTAATTTTT
TTATTCTTTCTTTTTTTTTTCTCTTTTTTTTTATTATTTTATATTCTTTT
TAATATTTGTTTTCTTTTTTTTGTCTTTTTTCTTTCTTTTCTTTATCTTA
TCTCTCTTTTTTTTTTTCTTCTTTTTTATTCTAATCTTTCTTTCTCTCTT
TTTTTTTATATTTTTTTTTTTTTGNCATATATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_c17.b1 MSMg01no192_c17.b1 CHROMAT_FILE:
MSMg01no192_c17.b1 PHD_FILE: MSMg01no192_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:11 2005
         (415 letters)



>mm_chr6_14335181_14335998
          Length = 818

 Score =  630 bits (326), Expect = 0.0
 Identities = 395/428 (92%), Gaps = 23/428 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacacacagagcaaggcatacacacacatacatgtgaatacacacagagcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattcacacacacagagcaaggcatacacacacatacatgtgaatacacacagagcaag 554

                                                                       
Query: 65  acaaacacaaatgcaaatagacacacacatacataacaaatcacacagagagaaaacatt 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acaaacaaaaatgcaaatagacacacacatacataacaaatcacacagagagaaaacatt 494

                                                                       
Query: 125 catgcataactatgt------ggggccccaagtctcattcatcttagagttctgggggtt 178
           |||||||||||||||      ||||   ||||||||||||||||||||||||||||||||
Sbjct: 493 catgcataactatgtgggggggggg---caagtctcattcatcttagagttctgggggtt 437

                                                                       
Query: 179 ataacagtaattttggttgtctttatgggtccccccttcagctt-aaatcattgatccta 237
           |||||||||||||||||||||||||||||||||||||| ||||| || | |||||| |||
Sbjct: 436 ataacagtaattttggttgtctttatgggtcccccctttagcttgaact-attgattcta 378

                                                                       
Query: 238 gaaaaaaaggact-cagagcctataactttaggtaaacaagtataggcctgaccatgaac 296
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaaaaaaagga-tgcagagcctataactttaggtaaacaagtataggcctgaccatgaac 319

                                                                       
Query: 297 attt---------ctgggccaattagctaagaagccctgctggtgagagactaagcctgc 347
           ||||         |||||||||||||||||| ||| ||||||||| |||||||||| |||
Sbjct: 318 atttctgacaagactgggccaattagctaaggagcgctgctggtgggagactaagcttgc 259

                                                                       
Query: 348 ttggcctttgtctcaggtcagacaggtatggaagaagctaaaagtttgccattatcatta 407
           |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 258 ttggcctttgtctcaggtcagacaggtatggaag-agccaaaagtttgccatcatcatta 200

                   
Query: 408 tttatctg 415
           ||||||||
Sbjct: 199 tttatctg 192


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 818
Length adjustment: 9
Effective length of query: 406
Effective length of database: 809
Effective search space:   328454
Effective search space used:   328454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |