BAC Information

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BAC

Clone NameMSMg01-192F21
Chromosome6 (Build37)
Map Location 111,229,727 - 111,313,936
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192F21.T7 (MSMg01no192_f21.b1)MSMg01-192F21.TJ (MSMg01no192_f21.g1)
ACCAG382067AG382068
length1,2361,203
length of high quality
(start - end)		419 (31 - 449)380 (72 - 451)
definitionCHROMAT_FILE: MSMg01no192_f21.b1 PHD_FILE: MSMg01no192_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:37 2005CHROMAT_FILE: MSMg01no192_f21.g1 PHD_FILE: MSMg01no192_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,229,727 - 111,230,129)(111,313,557 - 111,313,936)
sequence
NNNAATCACTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CCACCAATGAGATATATTCCCAGGACCTAAATGGTATATAGTTTTATTAT
TTGTTGTATTAGTGTTTGTGCACTATGAATATGTGTGGTAACATATATAA
AAGCACATGTAGAAGTTAGAGAACACATTTAAGGTGTCCATTCTCTCCTT
CTGCATTTTCATGGAGTCTGGTGATCAAACAGACATCATTGGACTTAAGC
AGCAAGCCCCTTTACCTGCTGAACCATATTGTACAATCTTTGAACCATAT
TGTATACTCTTAAATGGTTTTGATGGCTCCAAATGTTCTTATTTCAGATA
GCAGCAAGGCTTTGATATTCTAATAATAAGTTTTTGATCCATGATTACCT
ATGTGTCATTATTAACAAAGCTTGTCTAATATCCTAGTTAATACATCTTT
TTTTTTTCCCCCCCCCCTTAGTGTATGCAAAGTTACCAAAAAAAGTATAC
CAAATGATAATGCTAATAATTATTAAAAATATCTTACATGGCTAAAGAAA
CACACTCACACGCTCACTGGCTTGTTTTTTTATAATTTTGGATGGGTGAA
TTATTTTGTGTGNTTTNTNATNTTTTCNTTTTTTTTTTTTTCTTTCTTTT
TTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTCTCTTTTTCTCTTTCTTT
TTTTTTTTTTTTTTTCTTTTTTTTTCTTTTTTCTCTCCTTTTTTTTTCTT
CCCTTCTTTCCTTCTCCTTTTTTTTCTTTTTTTNCTTCTCTTTTTTTCTT
TTCTTTTTTCTTCTCTTCCTTTTTTTTTTATTCTTTCTTCTTTCTTNCTT
TTTTCTTTTTTCTTTTTCTTTTTTTTTTTCTTTTCTTTTTTCTTTTTTTC
CTTTTCATCTTCTTTTCTTTTTTTTTTTTCCTTCCTTTTTTTTTCTCATT
ACTTTCCATTTTTTTTTATTTTATATTCTTTTCATTCTTCTTTATTTTTT
TCACTTTAATTTCTTCTTTTCTATCTCTTTTTTATACCTTCATATCCATA
TTTCATCTCTCTATCTTTTATCTCTTTTTTCTTTTCTTTTTCTTTTAATT
TTTTATCTATTCTCCTCTTTTATTTTCTTTTTTTCTTTTACTTTATTTTT
TTTTTCTCTCTTCTTCTCTTTCTATTTATTATTTTCTTTACTTTCTTCTT
ATTTACTTTTTTCATCTTTCTTATTCTACTATATTC

NNNGGACTCAGCGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAACAGCCAAGACTGGAGAACGAAATC
TCCTTTTTCTCAAGAAAAACAAATGACACAACAAACAAAACAAGTTGAAA
ACAATAACAAAAAAACCTAAGCCCACTTTGTTGGTGAGTTATTATCAAAA
TTAAACAAAGTACAGTCACCTAGGAATGGGGCATCTCTACTCTGGAACTA
CCCCTGTCAGACTGGCCTTTAGGTTATTCTGTATGCCATCTTCTTGTTTA
ATGGTTAATATGGGTGGGCCCAACCATGTTGGGGAGTGCCTCCCTGAGCA
GGTGGCCATGGGTTTTATAAGAAACCAACCTGAGGACCATAAGAAGCAAT
CCAGTAAACAGATTTCCTCCACAGTTTTTGCTTCCAGGTTGGCTTGTCTC
TATTTTTTACCCCCCCCCAAGTCACACCAACCCTTTTAAAAATAAAAGTT
GCTTTTGGCCATGGTGTTTATTACAGAAACAGCAAACTAGGAAACCCACA
AGAAAACAAACAAACAAACAAACAAACACAACAAACCAAAACCTCCAGTT
CTAGTCTCCTAGTTTGGTGTGGTGACAGCAGCTATGTGTTACTTTTTTAC
ACAAACGCTGGAATTTGAGAATAGGACTATCATATCCCACATAATTCTAA
ACCCTTTGGTGCAGGTTACACTTTGTGGTCATATTTTGGAAGCAACCTCT
TATGGGTGAAAGACAAAATTCTTATTTTTCTTAAAAAAATTCCTATCTCC
CTCTCCTACTGTCCCGTCTGGGCCCAATGCTGTTTCATATGTTTGTTATC
CATTGCTCTACTTTTATTTATATACTGGAATTATACTACTTCCAATAATA
AGGGATTAATTTTTCTTATTTTTTCTAATTATCCTTGTTTTTCTTATTTT
TTTATAATTTCTCTTTTTAACTCTATAACTATTACACTCTTTTTATCCTC
TTTTTAACTTTTTTTCATAAAATTTTTACTCTTCTTTTTTATTATTCCGT
TCTTATCTCTTTTTTTCTTTAATTCTTCTTATCTATTATAATTTAATTTT
ATTCTCTTTACTTTCTTTTTCTTTTTTTATTTTCTACTTTTATTATCTTT
TTTATATATTATTTTTACTACTCTTATTATCTCTTTTTTTATCTTTTCTC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_f21.b1 MSMg01no192_f21.b1 CHROMAT_FILE:
MSMg01no192_f21.b1 PHD_FILE: MSMg01no192_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:37 2005
         (419 letters)



>mm_chr6_111229513_111230331
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattccaccaatgagatatattcccaggacctaaatggtatatagttttattatttgt 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattccaccaatgagatatattcccaggacctaaatggtatatagttttattatttgt 274

                                                                       
Query: 75  tgtattagtgtttgtgcactatgaatatgtgtggtaacatatataaaagcacatgtagaa 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtattagtgtttgtgcactatgaatatgtgtggtaacatatataaaagcacatgtagaa 334

                                                                       
Query: 135 gttagagaacacatttaaggtgtccattctctccttctgcattttcatggagtctggtga 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gttagagaacacatttaaggtgtccattctctccttctgcattttcatggagtctggtga 394

                                                                       
Query: 195 tcaaacagacatcattggacttaagcagcaagcccctttacctgctgaaccatattgtac 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcaaacagacatcattggacttaagcagcaagcccctttacctgctgaaccatattgtac 454

                                                                       
Query: 255 aatctttgaaccatattgtatactcttaaatggttttgatggctccaaatgttcttattt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatctttgaaccatattgtatactcttaaatggttttgatggctccaaatgttcttattt 514

                                                                       
Query: 315 cagatagcagcaaggctttgatattctaataataagtttttgatccatgattacctatgt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cagatagcagcaaggctttgatattctaataataagtttttgatccatgattacctatgt 574

                                                      
Query: 375 gtcattattaacaaagcttgtctaatatcctagttaatacatc 417
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtcattattaacaaagcttgtctaatatcctagttaatacatc 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no192_f21.g1 MSMg01no192_f21.g1 CHROMAT_FILE:
MSMg01no192_f21.g1 PHD_FILE: MSMg01no192_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:37 2005
         (380 letters)



>mm_chr6_111313467_111314246
          Length = 780

 Score =  735 bits (380), Expect = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaacagccaagactggagaacgaaatctcctttttctcaagaaaaacaaatgacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cagaacagccaagactggagaacgaaatctcctttttctcaagaaaaacaaatgacacaa 411

                                                                       
Query: 61  caaacaaaacaagttgaaaacaataacaaaaaaacctaagcccactttgttggtgagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caaacaaaacaagttgaaaacaataacaaaaaaacctaagcccactttgttggtgagtta 351

                                                                       
Query: 121 ttatcaaaattaaacaaagtacagtcacctaggaatggggcatctctactctggaactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttatcaaaattaaacaaagtacagtcacctaggaatggggcatctctactctggaactac 291

                                                                       
Query: 181 ccctgtcagactggcctttaggttattctgtatgccatcttcttgtttaatggttaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccctgtcagactggcctttaggttattctgtatgccatcttcttgtttaatggttaatat 231

                                                                       
Query: 241 gggtgggcccaaccatgttggggagtgcctccctgagcaggtggccatgggttttataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gggtgggcccaaccatgttggggagtgcctccctgagcaggtggccatgggttttataag 171

                                                                       
Query: 301 aaaccaacctgaggaccataagaagcaatccagtaaacagatttcctccacagtttttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aaaccaacctgaggaccataagaagcaatccagtaaacagatttcctccacagtttttgc 111

                               
Query: 361 ttccaggttggcttgtctct 380
           ||||||||||||||||||||
Sbjct: 110 ttccaggttggcttgtctct 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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