Query= MSMg01no192_i09.b1 MSMg01no192_i09.b1 CHROMAT_FILE:
MSMg01no192_i09.b1 PHD_FILE: MSMg01no192_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:00 2005
(233 letters)
>mm_chr6_134199718_134200350
Length = 633
Score = 383 bits (198), Expect = e-111
Identities = 224/238 (94%), Gaps = 10/238 (4%)
Strand = Plus / Plus
Query: 1 cacctctgccttagcttcttgaaaaatct-----taagtcatccatttctaggtgtttgc 55
||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 201 cacctctgccttagcttcttg-----tctcctcttaagtcatccatttctaggtgtttgc 255
Query: 56 ctgtccctgagtacacctccaccgttgccttggatttattgctataataatttacatcga 115
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgtccctgagtacacctccaccactgccttggatttattgctataataatttacatcga 315
Query: 116 ggttgttgaattaagacaataaaatggaggggctgtgggggagatagtgcagtcttaacg 175
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 316 ggttgttgaattaagacaataaaatggagaggctgtgggggagatagtgcagtcttaacg 375
Query: 176 cgctctgtttaggccccaggccccaggggtcatggcaaacacctgtgatcccagtgct 233
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 cgctctgtttaggccccaggccccaggggtcatggcatacacctgtgatcccagtgct 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no192_i09.g1 MSMg01no192_i09.g1 CHROMAT_FILE:
MSMg01no192_i09.g1 PHD_FILE: MSMg01no192_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:00 2005
(386 letters)
>mm_chr6_134365540_134366325
Length = 786
Score = 731 bits (378), Expect = 0.0
Identities = 381/382 (99%)
Strand = Plus / Minus
Query: 5 ggggctcattgtctctctcaccccactacagttttctccctggtcacgtcccactctcat 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 586 ggggctcattgtctctctcaccccactacagttttcttcctggtcacgtcccactctcat 527
Query: 65 aggtaaacacgcagcttcactggactctctccccttccagagagttccctgaagcgtcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aggtaaacacgcagcttcactggactctctccccttccagagagttccctgaagcgtcct 467
Query: 125 ctgaaaggcaggtgcttggtgtgtggtgttctgggaagaccagactgcaagggccaccca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctgaaaggcaggtgcttggtgtgtggtgttctgggaagaccagactgcaagggccaccca 407
Query: 185 gacccttgctgagtgagtggcagtcacattgagaagttttctagtctgtggactcctggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gacccttgctgagtgagtggcagtcacattgagaagttttctagtctgtggactcctggt 347
Query: 245 ctgtgctggaagaggtgagatttcacttcccttccccaggcaggtgggtgagcccttaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctgtgctggaagaggtgagatttcacttcccttccccaggcaggtgggtgagcccttaga 287
Query: 305 caaagcagctccctgagaggccagcagagtctagtgtctgtctgggttcagttgcagttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 caaagcagctccctgagaggccagcagagtctagtgtctgtctgggttcagttgcagttg 227
Query: 365 taacctcacctggcttgccgca 386
||||||||||||||||||||||
Sbjct: 226 taacctcacctggcttgccgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
