BAC Information

Click to search

BAC

Clone NameMSMg01-194I11
Chromosome6 (Build37)
Map Location 6,660,553 - 6,661,091
singlet/doubletsinglet
Overlap genenone
Upstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1
Downstream geneLOC545826, Dlx6as, Dlx5, Acn9, EG667500, Tac1, LOC667511, Asns
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194I11.T7 (MSMg01no194_i11.b1)MSMg01-194I11.TJ (MSMg01no194_i11.g1)
ACCAG383414AG383415
length750755
length of high quality
(start - end)
185 (100 - 284)536 (75 - 610)
definitionCHROMAT_FILE: MSMg01no194_i11.b1 PHD_FILE: MSMg01no194_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:25 2005CHROMAT_FILE: MSMg01no194_i11.g1 PHD_FILE: MSMg01no194_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATAGTTTCAAGCTGGGCGGAANCANAGCTGGTTGCGGTGACGACGGCT
NNAANCCCAGCACTCGGGAGGCAGAGGCAAGTGGATTTCTGAGCCTCAGG
CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA
AACCCTGTCTCGAAAAACCAAAACAACAACAACAAAAAAAAAGAATTCAT
AAAATATCAATCAAACTGGACATTGAACTTTTTTTCCACACCAGTCTTTA
AGTTCAGCCATTCATGTTGTATCTCACAGACCCAGAACTGATCTTCCTCC
TTTTCACCACACGGAAGCTTCCTGAAACCTCTTTTTTTCTCCCCCCCCCC
CTCCCTTATTTTCCAGTCCTAAATAGGTATTATCTCCCCCCCCGACCAAT
AAATCATGCTAATACTAGTGTGGATCCGCCTGTCTACCACTCTCTCTTTA
AGTCTAATTTACAAACTGCTCTGAATACAGAGTCTAATGCCATCAAAATT
AACCTGATGAAATTGATTGTATTTAATAACTATAAATGCCCTCTCTTATC
CCTACGCAAATTATATATATTTTCTTTTTTACATTTACTATCTTATTATA
ACTCACCACCTCATCCATAATATATCAACATTCACCACCTTATATTTTTT
TTTTATTATTCTCTGACACCACGAGACTCTAACCTCCTCCCCTTCTCTAC
AATTTACTTTTACACACTACTTTATTTTTAATTAATTTCTCTAATGTTTC

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGTGACCTTTGCAGTCAGAAATGA
GCATGTTACTATAAAGATGGCCTTGCAATTGAAGCTTTAAGCAAAGTCTT
TTTAACCTGCTGGATAGCCATGGTTGGCATCATCACAAGAAATGAGTCTG
GGCTCACTTTTGCTATCAGATTCTGCACAATCAAGACAGTTGGCCTGCCT
CTAGTACTGAATCCTGGGTTCTCATAGTAACTTTTAAAAATTTATTGAAG
TTTTACCTGTTTTATCAATTTGCAAGAGAAAAAAATAAGAATAATAAAAT
TGAAAAACATTAGGGAATGTTCATATTTCTATTTTGAAAGTAAAGATAGT
CAGGCATGATGGCCCACCACCATCACAGTGCTGAAGACAATAAAGCAGAA
GGGTGAAGATTCGAAGCCAGCCAGGCTACCTAGTACATTCTAGGTTAGTA
AGACCTTGACTCAAAACTCCAGCAAATACGTAAAGAAGAAAAGCTAAATA
TAGGTATGGTGATACAGATTCTAGCTAATTATGAGTTAGGAAAGTCAGAG
AAATTTTACATACTTATAACCAATAGTAAAACTAGACTTTTTAGAAAGAA
AATAAAAAGTATAATGTTCTATCAATATTATACTGCTAAAATATTTTCAA
GGCACTAATACTTGATACAATAATATTATTGAATTCCAGGTTCTTGAAGC
TTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_i11.g1 MSMg01no194_i11.g1 CHROMAT_FILE:
MSMg01no194_i11.g1 PHD_FILE: MSMg01no194_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:25 2005
         (536 letters)



>mm_chr6_6660353_6661291
          Length = 939

 Score =  926 bits (479), Expect = 0.0
 Identities = 523/539 (97%), Gaps = 3/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtgacctttgcagtcagaaatgagcatgttactataaagatggccttgcaattgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atagtgacctttgcagtcagaaatgagcatgttactataaagatggccttgtaattgaag 260

                                                                       
Query: 61  ctttaagcaaagtctttttaacctgctggatagccatggttggcatcatcacaagaaatg 120
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttaagcaaagactttttaaactgctggatagccatggttggcatcatcacaagaaatg 320

                                                                       
Query: 121 agtctgggctcacttttgctatcagattctgcacaatcaagacagttggcctgcctctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctgggctcacttttgctatcagattctgcacaatcaagacagttggcctgcctctag 380

                                                                       
Query: 181 tactgaatcctgggttctcatagtaacttttaaaaatttattgaagttttacctgtttta 240
           |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 381 tactgagtcctgggttctcatagtaacttttaacaatttattgaagttttacctgtttca 440

                                                                       
Query: 241 tcaatttgcaagagaaaaaaataagaataataaaattgaaaaacattagggaatgttcat 300
            |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gcaatttacaagagaaaaaaataagaataataaaattgaaaaacattagggaacgttcat 500

                                                                       
Query: 301 atttctattttgaaagtaaagatagtcaggcatgatggcccacc---accatcacagtgc 357
           ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 501 atttctattttaaaagtaaagatagtcaggcatgatggcccaccctcaccatcacagtgc 560

                                                                       
Query: 358 tgaagacaataaagcagaagggtgaagattcgaagccagccaggctacctagtacattct 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tgaagacaataaagcagaagggtgaagattcgaagccagccaggctacctagtaaattct 620

                                                                       
Query: 418 aggttagtaagaccttgactcaaaactccagcaaatacgtaaagaagaaaagctaaatat 477
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 aggttagcaagaccttgactcaaaactccaacaaatacgtaaagaagaaaagctaaatat 680

                                                                      
Query: 478 aggtatggtgatacagattctagctaattatgagttaggaaagtcagagaaattttaca 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtatggtgatacagattctagctaattatgagttaggaaagtcagagaaattttaca 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 939
Length adjustment: 10
Effective length of query: 526
Effective length of database: 929
Effective search space:   488654
Effective search space used:   488654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)