BAC Information

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BAC

Clone NameMSMg01-194N14
Chromosome6 (Build37)
Map Location 113,904,275 - 114,009,516
singlet/doubletdoublet
Overlap geneAtp2b2
Upstream geneEG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194N14.T7 (MSMg01no194_n14.b1)MSMg01-194N14.TJ (MSMg01no194_n14.g1)
ACCAG383613AG383614
length719741
length of high quality
(start - end)
314 (45 - 358)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no194_n14.b1 PHD_FILE: MSMg01no194_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:51 2005CHROMAT_FILE: MSMg01no194_n14.g1 PHD_FILE: MSMg01no194_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,009,211 - 114,009,516)(113,904,275 - 113,904,558)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAGCCCCAGCCCTGGGGAGGCAGACAGGAAGATCCATGGAGCTC
ACTGGCCAGGCAGTCTAGTCTGATTGGTGGACTTCAGGCCAATGAGACAC
CCTGTCTCAAATGAGGTGGACAATGTTTCTAAGGATGATTCCCTTGGCAG
TCCTCCAATCCCCACCACAGGCTCACACTCATGCACTTTGACACACATAC
GAACATACACACATGTACTCATAAGAACATGAATCGTAGTAACTCTAAGG
AGCAGACAAGTAAGTCGAATTTCAGTGTGGATGGCCCCTGCCTAAGGTCA
GAGGTTTTTCTGTGTCCCCCGGCANNCACAAGAGAAGCCCTGTTTTCTCT
CACCAACCTCCGGCCTCTCACAGGATACAAAGAGCTGAAGTCGCTGCTTT
TGTCAGGGAAGGGGTAGGGCCTGGCATGGTGCAGAAAAACTAGGGTAGGG
ACTGAAAGGGGAAAGGTTCACAGGCTGGCCTTGGCCAGAGGGAGCCCAGT
GCCTGCAGTCTTCAAAGGAAGGCTTCTCTGTGCTGATTAAAAGCACCTCT
TAGTTGACCAGAGGTGATAGGCATAATAACGCATAAATGAGAACTAATCA
TAATTCCATTAATGAACGTGTGCTTTATAAAATGCTATGCTCTGCGTTCT
TACCTCCACTTATTCCTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACCTTCCTCGCTGCTGGGCTGAGGG
TGGCACTCTTTGGCAGACTGAGGAACCTTTAGGAGATGGGGACAGGCTCC
CTGGGGGAATGCCTTTGAAGTTACTCTTGCTCCTGGTCCCAGGCTTGTTT
CCTCGGCTTCCTTCCTGCAGCCATGTGAACCATCTATGCCTCTCCGTTCT
GCCACTAGAGTTACCGCCTCCAGTTGCCGTCTCTTCCTTGTAGGATTGAC
AGCCCTTGAGTCTGTGAGCCCCCAAATACCTTCTCCACTTTGCATGTGGA
TGTGTGTTTGTGNGTCCGNAACCGAGCCCTCCCCAGCTTCCCTTCCTACT
TTTTATGTTTTTCCCCAAAAAAAAAAAAAAATGAGATGGGAGGGGGCCCA
GCTTGTCCTCATAATCACCCATGTACGCTAGGATGACCTTGAATTCCTAG
ACTTTCGATCTTTTCCTCCTGACTGCTGGTTCCACAAGCTTGTAAATTCC
CATCTCCTTCCTTTTCTCCCTTAGCTTCTTTTCAGGATTGACCTGCTCTC
GTATAGCATTCGTTTTTTCCGCTTATTTTATTATTGTTTTTCCTTTTCTT
TTTCTTCACCCCGTTTTCTCACCTTTTGTTTGCCTTGTTTATCGATTTTG
TTATACCTTCTATCTTCTTCTCTCCCGCTTTTTATCGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_n14.b1 MSMg01no194_n14.b1 CHROMAT_FILE:
MSMg01no194_n14.b1 PHD_FILE: MSMg01no194_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:51 2005
         (314 letters)



>mm_chr6_114008824_114009537
          Length = 714

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaagccccagccctggggaggcagacaggaagatccatggagctcactggcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattcttaagccccagccctggggaggcagacaggaagatccatggagctcactggcca 634

                                                                       
Query: 65  ggcagtctagtctgattggtggacttcaggccaatgagacaccctgtctcaaatgaggtg 124
           ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 633 ggcagtctagtctcattggtgggcttcaggccaatgagacaccctgtctcaaataaggtg 574

                                                                       
Query: 125 gacaatgtttctaaggatgattcccttggcagtcctccaatccccaccacaggctcacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gacaatgtttctaaggatgattcccttggcagtcctccaatccccaccacaggctcacac 514

                                                                       
Query: 185 tcatgcactttgacacacatacgaacatacacacatgtactcataagaacatgaatcgta 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcatgcactttgacacacatatgaacatacacacatgtactcataagaacatgaatcgta 454

                                                                       
Query: 245 gtaactctaaggagcagacaagtaagtcgaatttcagtgtggatggcccctgcctaaggt 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 453 gtaactctaaggagcagacaagtaagtcgaagttcagtgtggatggcccctgcctaaggt 394

                 
Query: 305 cagagg 310
           ||||||
Sbjct: 393 cagagg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no194_n14.g1 MSMg01no194_n14.g1 CHROMAT_FILE:
MSMg01no194_n14.g1 PHD_FILE: MSMg01no194_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:51 2005
         (284 letters)



>mm_chr6_113904075_113904758
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccttcctcgctgctgggctgagggtggcactctttggcagactgaggaacctttagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccttcctcgctgctgggctgagggtggcactctttggcagactgaggaacctttagga 260

                                                                       
Query: 61  gatggggacaggctccctgggggaatgcctttgaagttactcttgctcctggtcccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggggacaggctccctgggggaatgcctttgaagttactcttgctcctggtcccaggc 320

                                                                       
Query: 121 ttgtttcctcggcttccttcctgcagccatgtgaaccatctatgcctctccgttctgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttcctcggcttccttcctgcagccatgtgaaccatctatgcctctccgttctgcca 380

                                                                       
Query: 181 ctagagttaccgcctccagttgccgtctcttccttgtaggattgacagcccttgagtctg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggagttaccgcctccagttgccgtctcttccttgtaggattgacagcccttgagtctg 440

                                                       
Query: 241 tgagcccccaaataccttctccactttgcatgtggatgtgtgtt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcccccaaataccttctccactttgcatgtggatgtgtgtt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)