BAC Information

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BAC

Clone NameMSMg01-195E09
Chromosome6 (Build37)
Map Location 72,926,992 - 72,927,238
singlet/doubletsinglet
Overlap genenone
Upstream geneRpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
Downstream geneDnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195E09.T7 (MSMg01no195_e09.b1)MSMg01-195E09.TJ (MSMg01no195_e09.g1)
ACCAG383863AG383864
length719744
length of high quality
(start - end)
320 (36 - 355)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no195_e09.b1 PHD_FILE: MSMg01no195_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:26 2005CHROMAT_FILE: MSMg01no195_e09.g1 PHD_FILE: MSMg01no195_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAT
TGTTCACTTTCTTGCTTGAACTCTGATCACACTTACACAGTTCAGGACTC
ACTGCTAGAGAATGGTGCTGCCTACAGCGGGCTGGGCCACCCACATCAAT
TAATTAACATGACAATTCCCAACATGCCCATAAGCCAAGCCACTGGAAGC
AATCTCTCACCTGGACTCTCTTCCCAGTTGATTCTAGGCTGTGTCAAATT
GACAGTTAAAGCTGAGCACCACAGTAATAAACTCTATTTGGAAGTATATA
TAGAAACTCTCTATGTAAAAATTACTGCATCCAAGACTAAGAGCTAAATT
TTTTGTCTAACCCCCCCTCCCACTCAGTAGTATTCAGTGGCCAATATGAG
AGATTTTAAACTCTGTAGAAAGAGGCTTTCATACACACATACATGCACGC
ATGCACGCACACACACATACACACATACACACACACACACCAATAAAAAA
AACTTTACTTTTTAAATTATGATATGGCCTTGTCAGAGCGTGTGGATAAG
TCTGCTACTCAGCAGGAAAAAGGAACCTGGGATTGATCCCCAGGCCTCCC
ATGGTATGAGAGGCAGGCACCCTGAAAGTTACCCTTCTGACTTCATTGTG
CGAGCCGTAACACACCTACTGGAAAACTTTAAAATTTAGTAAAAAAGTTA
AATCCTCTAACAAGAATCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGGGTCAGAGCCTTTCTGGAG
CAGCAGTGGCTAGCAGCTGGTGGCCTGACCACCAAGCAGGCCATCACCCC
ATTCCTCCCACACCACGATGATGACCAGCTGTCTTGGGTGCTCTCCAGAA
CTTGTGTCATCTCGTCATCTCAGAGGAGAGGACAGAGTGAGCCTTTGGAC
CACAGAACAGCTTGGGGAGGAGGTGAGAGTACCACAGTGGCCATCTAGAG
TGAGTTCCTAGCCACTACCTGACTCGTTCTGGCTTCTATTCTAGAAGAGT
TCTCAGCCTGTTCAGTANCTCCNGGNACCATNTCGAATGTTAGTGACCCT
AAAGGCTCTAGTCAAAAACGGCCACATAAAAAAACAAAACATGGCTACCC
GCTGAGAGAGCAGACCTTGCTCCCTTGAATCTGTCTCCCTAGCCCAAGAA
GCCAAACACGTAAAGTCCTGTAGAAAGGCTGCAGAGATTGTTCAGTGATT
AAAAGCACTGACTGTGTTTTCATTGCTTCCAATTCCTGCTTCAAATAACT
GTCTTGATATTTCATTACCAGAATCTCTGATTCCCTTATATCCGCCCTGT
CATTACCCCGTGGCACTTGATACTCTTTTCATACAACATTTATATCCCTT
CTTCCCAAAAAACACATATATCCTTTAATAATCTATTTGCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_e09.g1 MSMg01no195_e09.g1 CHROMAT_FILE:
MSMg01no195_e09.g1 PHD_FILE: MSMg01no195_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:26 2005
         (249 letters)



>mm_chr6_72926792_72927440
          Length = 649

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggggtcagagcctttctggagcagcagtggctagcagctggtggcctgaccaccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggggtcagagcctttctggagcagcagtggctagcagctggtggcctgaccaccaag 260

                                                                       
Query: 61  caggccatcaccccattcctcccacaccacgatgatgaccagctgtcttgggtgctctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggccatcaccccattcctcccacaccacgatgatgaccagctgtcttgggtgctctcc 320

                                                                       
Query: 121 agaacttgtgtcatctcgtcatctcagaggagaggacagagtgagcctttggaccacaga 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacttgtgtcatctcatcatctcagaggagaggacagagtgagcctttggaccacaga 380

                                                                       
Query: 181 acagcttggggaggaggtgagagtaccacagtggccatctagagtgagttcctagccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcttggggaggaggtgagagtaccacagtggccatctagagtgagttcctagccact 440

                  
Query: 241 acctgac 247
           |||||||
Sbjct: 441 acctgac 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)