BAC Information

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BAC

Clone NameMSMg01-195F05
Chromosome6 (Build37)
Map Location 48,661,037 - 48,661,697
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6
Downstream geneGimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195F05.T7 (MSMg01no195_f05.b1)MSMg01-195F05.TJ (MSMg01no195_f05.g1)
ACCAG383896AG383897
length731735
length of high quality
(start - end)
502 (46 - 547)661 (75 - 735)
definitionCHROMAT_FILE: MSMg01no195_f05.b1 PHD_FILE: MSMg01no195_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:31 2005CHROMAT_FILE: MSMg01no195_f05.g1 PHD_FILE: MSMg01no195_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATTGACTCGGATATGTTGGTAATATTAATTTTCATATTAAGGA
ATATTAAGGAAAAGTGATTGTTACTTCCTGTTAATTTTTTTTGTTAGAGG
TGGAATTATGTTTGTGTGGGTTTGTTGAAAGATTACTTTCTTGCTTTTTC
TAGGGTGTAGTTTCACTCCTTGTGTTGGTGTTTTCCATCTATTATCCTTT
GTAGGGCTGGATTTGTGGAAAGATATTGTATAAATTTGATTTTGTCATTG
AATATCTTGTTTTCTCCGTCTATGGTGATTGAGAGTTTTGCTGGGTATAG
TAGCCTGGGCTGGCATTGTATTCTCTTAGTGTCTGTATGGCATCTGCCCA
GGATCTTCTAGCTTTCATAGTCTCTGTTGAAAAGTCTGGTGTAATTCTGA
TAGATCTGCCTTTATATGTTACCTGACCCTTTTCCCTTACTGCTTTTAAA
ATTATTTCTTTATTTAGTGCATTTGGTGTTTTGATTATTATGTGATGGGA
GGAATTTCTTCGCTTGTCCCGCCTATTGGAAGCTCTAAAGGCTTCTTCGA
TGTTCATGCGCATCTTTTTCTTCACGCCACACCCTCTTCCACCCACCTCT
TCTGGATATTCCCCTGGCCAACCCATCGCGAATATCCCCCTCTCTTCTAC
ACCACCATCCCTATCCTTTGCCTTCCCCCCG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTCAGTAGCACTAGCTCCTCAG
TTCCTGGTAAAATACAAACAAACTCTGGAATAAAAGCACTGGCTTCAGTC
CCTTGAAGGTCTCCAAATTTCCATTCAAAACCAGGGAACTTCCTCCAGAA
AAGTTAAATCATCCAAAGTGAGACTGGGAAGTAAAGGTTGGAAAGAGCTC
TACACCCGAACATCACATTTTTATCTCACATCCGTCAGGTTGGGCCCAGC
TCTGCTGCAGTAACAAGTACTGAGTTCTCAGGAGCTAAATGCCAGCTGAT
GTCTGGCCCGATCTGCCACAGATCTGAGAGACTCAAAGCCATCTTACAGA
AAACAGTAGATATCAGAACTAAAAACAGATGCTTCATTCTGATTATGAAT
GTGAAAAGCAACAGAATTTATATAGGTGATGAACATGATAACAGAGTACT
ATGTAAGTCCTAAAAAACACCCATGTTGAGACAATGTGCTGACTAACACT
GGGAAACTGGCACAAGGGTGTCCAGCATATGCCCACAGAGCCCTACACAT
GGTCCAAGACAAGGCAGAACTTACTTAAAGTGTGAGGTTTATTTATTTAC
TTACTTATTGCAGATTAGTGTTTGCCTGTATGTGTACAGGTGCCCTATGT
GTATGACTTTGCTGTAGTGGTGAGAAAAGTGCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_f05.g1 MSMg01no195_f05.g1 CHROMAT_FILE:
MSMg01no195_f05.g1 PHD_FILE: MSMg01no195_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:31 2005
         (661 letters)



>mm_chr6_48660837_48661898
          Length = 1062

 Score = 1201 bits (621), Expect = 0.0
 Identities = 651/661 (98%), Gaps = 1/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttcagtagcactagctcctcagttcctggtaaaatacaaacaaactctggaataaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tctgttcagaagcactagctcctcagttcctggtaaaatacaaacaaactctggaataaa 802

                                                                       
Query: 61  agcactggcttcagtcccttgaaggtctccaaatttccattcaaaaccagggaacttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcactggcttcagtcccttgaaggtctccaaatttccattcaaaaccagggaacttcct 742

                                                                       
Query: 121 ccagaaaagttaaatcatccaaagtgagactgggaagtaaaggttggaaagagctctaca 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagagaagttaaatcatccaaagtgagactgggaagtaaaggttggaaagagctctaca 682

                                                                       
Query: 181 cccgaacatcacatttttatctcacatccgtcaggttgggcccagctctgctgcagtaac 240
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 681 cccgaacatcacatttttatctcgcatccgtcaggctgggcccagctctgctgcagtaac 622

                                                                       
Query: 241 aagtactgagttctcaggagctaaatgccagctgatgtctggcccgatctgccacagatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtactgagttctcaggagctaaatgccagctgatgtctggcccgatctgccacagatc 562

                                                                       
Query: 301 tgagagactcaaagccatcttacagaaaacagtagatatcagaactaaaaacagatgctt 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagagactcaaagccatctgacagaaaacagtagatatcagaactaaaaacagatgctt 502

                                                                       
Query: 361 cattctgattatgaatgtgaaaagcaacagaatttatataggtgatgaacatgataacag 420
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattctgattatgaaagggaaaagcaacagaatttatataggtgatgaacatgataacag 442

                                                                       
Query: 421 agtactatgtaagtcctaaaaaacacccatgttgagacaatgtgctgactaacactggga 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtactatgtaagtcctaaaaaccacccatgttgagacaatgtgctgactaacactggga 382

                                                                       
Query: 481 aactggcacaagggtgtccagcatatgcccacagagccctacacatggtccaagacaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactggcacaagggtgtccagcatatgcccacagagccctacacatggtccaagacaagg 322

                                                                       
Query: 541 cagaacttacttaaagtgtgaggtttatttatttacttacttattgcagattagtgtttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaacttacttaaagtgtgaggtttatttatttacttacttattgcagattagtgtttg 262

                                                                       
Query: 601 cctgtatgtgtacaggtgccctatgtgtatgact-ttgctgtagtggtgagaaaagtgca 659
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cctgcatgtgtacaggtgccctatgtgtatgactgttgctgtagtggtgagaaaagtgca 202

            
Query: 660 c 660
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)