Query= MSMg01no196_j13.b1 MSMg01no196_j13.b1 CHROMAT_FILE:
MSMg01no196_j13.b1 PHD_FILE: MSMg01no196_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:12 2005
(312 letters)
>mm_chr6_116161211_116161923
Length = 713
Score = 584 bits (302), Expect = e-171
Identities = 308/310 (99%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatgagaatcaatgtcagagtttgaagaacatacacaggtgagcagacagatgc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattcatgagaatcaatgtcagagtttgaagaacatacacaggtgagcagacagatgc 454
Query: 64 aataggcatttttgcgaagttga-tttttttccctcagttttctgaaggactagctattc 122
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 453 aataggcatttttgtgaagttgattttttttccctcagttttctgaaggactagctattc 394
Query: 123 tcccaacatcatcagctgctcctccacaatgggaagacgctgtgtgtgccatgtggcatc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcccaacatcatcagctgctcctccacaatgggaagacgctgtgtgtgccatgtggcatc 334
Query: 183 gtaaaagatcttggaagcatttacatttagtgtggcaccaacacacttctgaaggatcct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtaaaagatcttggaagcatttacatttagtgtggcaccaacacacttctgaaggatcct 274
Query: 243 gatggcagactgggagaggaataaggccttctcgttaaggggacaaagacatgaatggaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gatggcagactgggagaggaataaggccttctcgttaaggggacaaagacatgaatggaa 214
Query: 303 atacagaatc 312
||||||||||
Sbjct: 213 atacagaatc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space: 213312
Effective search space used: 213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_j13.g1 MSMg01no196_j13.g1 CHROMAT_FILE:
MSMg01no196_j13.g1 PHD_FILE: MSMg01no196_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:12 2005
(296 letters)
>mm_chr6_116055085_116055780
Length = 696
Score = 565 bits (292), Expect = e-165
Identities = 295/296 (99%)
Strand = Plus / Plus
Query: 1 acagagatctgcctgtgtctgccttccaaatgctagaaatgaaaggtactaagagagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagatctgcctgtgtctgccttccaaatgctagaaatgaaaggtactaagagagatg 260
Query: 61 agctttactcctcctgtacctttatgtttcccttctttttttcttagcccaccggtgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 agctttactcctcctgtacctttatgtttcccttctttttttcttagcccatcggtgaac 320
Query: 121 aatgaatagtctacaggaatcacatggcaagtgaattcaggatcaatagacatggaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaatagtctacaggaatcacatggcaagtgaattcaggatcaatagacatggaggtt 380
Query: 181 aaatccaccacaaacctttacaaatatttccttccacaaattttctgacacaaattccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatccaccacaaacctttacaaatatttccttccacaaattttctgacacaaattccta 440
Query: 241 ttaaaacactgagatattaagaaaattatattcttgtacacgattctttttgatta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaacactgagatattaagaaaattatattcttgtacacgattctttttgatta 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
