BAC Information

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BAC

Clone NameMSMg01-197H03
Chromosome6 (Build37)
Map Location 102,626,162 - 102,626,344
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197H03.T7 (MSMg01no197_h03.b1)MSMg01-197H03.TJ (MSMg01no197_h03.g1)
ACCAG385173AG385174
length781723
length of high quality
(start - end)
---183 (117 - 299)
definitionCHROMAT_FILE: MSMg01no197_h03.b1 PHD_FILE: MSMg01no197_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:20 2005CHROMAT_FILE: MSMg01no197_h03.g1 PHD_FILE: MSMg01no197_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGAGGGCGGGAGAGAAGAAAAAAAACAACGAAGACCTCTTCAAGTTATT
ACCCTCTAAAATTGCGCCGGCTAAAGATCAAATTCGGACCCGNANNGNGG
AANNNNNTTTACCNAACACGAGGGGNGAGGAAGAAAANAANTNNAGNAAG
GNNNNNNNGGGAATTTTCCCCANANAGGGGGGGGAAAANNNANNGANAGG
GANANANANAAGNAAAAAGANNNANNAAAANAAAGNAGGGAAGGAAANNG
GAAGAAAGGGNGGGAGAAAGGAGGNAAGGAANAAGAANAGGGNGGTATTT
TAAATGAATATATGATTTTGTNAATTGATATGAAGATTAAAAGAGATAGA
TAAGANGGAGAGATTTATATTTTTTAGANAAGAAGNAGAGGAGGAAAAGA
GAAATATTTGTTACCTCCCGCTCTCCTTGGAAGATTAGTGATTAGGACCA
CACAGAACACTGCACAAAAAAAAAAGAGCTGAGCCTGGGGGGCGGAAGAG
CAACATAAGAATAAAAACTCAGGCTGAAGGAAAGAAAGACCGGAGGGGCC
ACGAGGCAAACCTCGAGGCCCGGAGAGAACGAAAAATGAGGAAGGAGACC
AAGGGTAAAGTGCATGCGGAAAAGCCGATGAAAAAAAAGGAAAAACTGGA
AAAAAAAAAAACGAAAGAGGAAAGANTAAAGGGAGAGCGGAGGGACAACA
CAGCGGAGATTTTTTATTTTTTTTAGAAAAGGGCAAAAAAAGAATAGGGA
GGAACGAAAAAGTAAATAACGCCAGGAGGCG
TGGCGGCCGCCGGATACGCACCCGAGAGGNGACACNANAGAAGTTTCGGC
AGGAGGCCAGAGGGAGNAAAGGNANACAGGAGGAGAAGAGGGAGAGTTTT
AGTCATGAAAGAGAGATAAATAGAGTGCACTTATATACAACATTCTAAGT
AAAAATTAAAAATATTTTAAGGGATGCACATATTGAGGTTGCTTAGTAAG
TAAAGGTACATGCCACTCAGTTTGAAAACCTGATCTTTACAAGGGATGTG
TTGAGTTCCAAATACAGTATCTACATAATAGAAGGAGAAAGCCAAGTCTT
TCTTTTTTTCCNCNGACCNCCANACAAGACACGCGGGAAGNGNGTCCCTC
CCCCCCCCCCCACAACNGNAAAAAANGAAAGNAGCCCAANCCCCAGGACA
GGNAAAGACACCAAAGACANNNCGCAGAGGAGACACCNGGCACANANCAG
AAAGNAGCCCGGAGCCCCAGNNAAAACCAAGAAGCCNGNGAAAGCNCGCA
CGACAANNNNCAAAAACACANGGNNAAAGAGGCANACAGNGCAAACACAN
CCCAAACAAAGGGGNACAAACGCACNCCAGAAAANNCGCCACCNNNGCAG
CCCCAAGNGNNNAAGCCCACACACNCAACACGANCATGACTATTATTTTG
ACACAGGAAAACAAAAATAGAAAGAATTCACTATTTGCCCTAAAAGAAGC
ATTCTTTTTAGTGAGAAAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_h03.g1 MSMg01no197_h03.g1 CHROMAT_FILE:
MSMg01no197_h03.g1 PHD_FILE: MSMg01no197_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:20 2005
         (183 letters)



>mm_chr6_102625962_102626544
          Length = 583

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatagagtgcacttatatacaacattctaagtaaaaattaaaaatattttaagggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatagagtgcacttatatacaacattctaagtaaaaattaaaaatattttaagggatg 260

                                                                       
Query: 61  cacatattgaggttgcttagtaagtaaaggtacatgccactcagtttgaaaacctgatct 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 261 cacatattgaggttgcttagtaagtaaaggcacatgccactcagtttgaaaacctgatca 320

                                                                       
Query: 121 ttacaagggatgtgttgagttccaaatacagtatctacataatagaaggagaaagccaag 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaagggatgtgttgagttccaaatacagtatctacataatagaaggagaaagccaag 380

              
Query: 181 tct 183
           |||
Sbjct: 381 tct 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)