BAC Information

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BAC

Clone NameMSMg01-197M10
Chromosome6 (Build37)
Map Location 123,586,351 - 123,586,540
singlet/doubletsinglet
Overlap geneEG546913
Upstream geneEG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32
Downstream geneLOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M10.T7 (MSMg01no197_m10.b1)MSMg01-197M10.TJ (MSMg01no197_m10.g1)
ACCAG385366
length727713
length of high quality
(start - end)
---195 (128 - 322)
definitionCHROMAT_FILE: MSMg01no197_m10.b1 PHD_FILE: MSMg01no197_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:47 2005CHROMAT_FILE: MSMg01no197_m10.g1 PHD_FILE: MSMg01no197_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXN
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAGCTATACCAC
TTTCTATGTGTTAGCCTGCCTGCCATCGAATTCAAAACACACAAAAGATT
TATGTGATCTAAAGGCATAATTATCCCTTAGTCCAGCAATAACCCATAGT
CCTGTGTAAAAAACTCTAATCAAATTCAAAGGATCCTTCCTACAAAAAGA
AGCCATGAGAATGAAAGAAGGCTGCTTAGGAAAAAGCCTCCAACAGGGGA
TGGAGAAATAGAGAATGCTATGTGTGCAGAAGTAGAAAATGTCCACAATT
CATTAATTAAGTATTTGAAAGTATCAAACAATGAGAAAATTTAAACAATC
TCAAAAACTAAAGTGTTCACCACCATGAAGAGGAAGGAACTTTGGTACAT
CTTTAGTAACTCAGCAGGTTTGTAAAGGAACAGAGGGTAAACATTTGGAA
AGATGACGAGTCATGATAAGTGCCACTCCATTCAATCCATAATCATTTTA
GAGAAATTTTTTACTGCTTCAAATGTCATTGTTATCTGATTTTCAATATG
ACCCCTGATTATATATGTCCAGCCGTCCCCCAACCCATGTTTCTCCCCCC
CCTTTATACCCCTCCTTCGATTTCAATCTTTTGCTTTTACACAGCTTCGT
GCCCTTTTCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m10.g1 MSMg01no197_m10.g1 CHROMAT_FILE:
MSMg01no197_m10.g1 PHD_FILE: MSMg01no197_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:47 2005
         (195 letters)



>mm_chr6_123586150_123586744
          Length = 595

 Score =  234 bits (121), Expect = 3e-66
 Identities = 174/193 (90%), Gaps = 6/193 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   aattcaaaacacacaaaagatttatgtgatctaaaggcataattatcccttagtccagca 61
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 aattcaaaacacacaaaagatttatgtgatctaaagggataattatcccttagtccagca 261

                                                                       
Query: 62  ataaccc--atagtcctgtgtaaaaaactctaatcaaattcaaaggatccttcctacaaa 119
           |||||||  ||  |||||||| |||||||||||| ||||||| |||||||| |||||| |
Sbjct: 262 ataacccccat--tcctgtgttaaaaactctaattaaattcagaggatcctacctacaca 319

                                                                       
Query: 120 aagaagccatgagaatgaaagaag-gctgcttaggaaaaagcctccaacaggggatggag 178
           |||||| ||| ||||||| ||| | |||||||||||||||| ||||||||||||||||||
Sbjct: 320 aagaagtcattagaatgagaga-gtgctgcttaggaaaaagtctccaacaggggatggag 378

                        
Query: 179 aaatagagaatgc 191
            | ||| ||||||
Sbjct: 379 gagtagggaatgc 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)