BAC Information

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BAC

Clone NameMSMg01-198H09
Chromosome6 (Build37)
Map Location 3,339,183 - 3,339,494
singlet/doubletsinglet
Overlap geneSamd9l
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335
Downstream geneAI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198H09.T7 (MSMg01no198_h09.b1)MSMg01-198H09.TJ (MSMg01no198_h09.g1)
ACCAG385780AG385781
length766726
length of high quality
(start - end)
316 (36 - 351)268 (379 - 646)
definitionCHROMAT_FILE: MSMg01no198_h09.b1 PHD_FILE: MSMg01no198_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:42 2005CHROMAT_FILE: MSMg01no198_h09.g1 PHD_FILE: MSMg01no198_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAAC
TTTGGAGTATATGCTGGAGACCCCTTTCATGGTGGCTGACTAAGAAGCAT
ATGGCTAATCTAGGTCATCCATGATTATCATTTGTCCATTTCAGATGATA
TTCATTTTGATGAGTTGAAATTCTAGCGAAAAGGGTCTACTTTGGCTAGG
CTTGCCCATAGTGATGCTGGCTTTTCTTCTTTTGTCATTACAAGATATTT
TGTGATGATGAAATTCCAAATGTAATGATATACACATAATATTTTCACAA
ATATTTCCATTTACTGTTTCATTTATATTTACATGGTTTCTATGCCATTT
GATTTTTTATGCCCCCTTCGCCCACGTTAGATTTGGTGTTCTAATTTTTC
TAGATCCCCCCCATCACAAAAAGAAAAATCTGACTTTTTGGAGTATTCTC
TTCCATTCTAAACCTTTCTGATCTGTTCTATGGTTGGATTCACACCTCTT
ATGTCTATTGTGTCTGTTTTTTATACGAATACCGCTTGGTCTTCGTCTTC
CATAATTATTTTACCTTTTACCCTTTGAATTTTATATTGTTTTCCCTTAT
TTCTGTCTCTTTCTCTCCTTTGATTATCATAGTCCAGGGTTATTGTACCC
CACACCACGCTTATCTTTCCCTCCTTTTCCTTTTTGATCTCTTCCCTCAT
CTCCATGTCTTTTTTCATTCTTTTACCCCCTACTCTCTTCTTTATCCTCT
TTCGTCTCACCTTCTN
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCATCCGGATCTATAGAGTGGG
TTCTAGGACAGCCTTAGTTCCCTAGGGAGAAAACAAAACATCATATGTGT
GTGTCATTCAGAGATTCAAAAAATATTAAATTTATAGTATACATGTAAAC
TTAAAGGGCAAACAATTATTTACACAAAGTATAGTAAAAGTTTAATATCC
TTAATGTAAAAAAGACTTTTACAAACTAATTTAAAAAAACTAACCAATTT
AGATATGAACAAAGATCATAAACATTCATCAAGACCCACATGTAGACAGA
ATAGCATTTTTGTTTGGAGCCCCATGCTGAAGCCAGAATGTACTATAAGG
GATGGTTATGTAAATCACAAAACTTCTAACAGAGGTCATATCACCACAGA
AGGATTTCTCCTAGAACCCCACTTTTGAAGAATAATTATTTAAAGAAAGA
ACAAGATAAAAATTGTGTAGGTAGCAGATTCTCAATTTGAAAACACATTG
CTAATGCTTATGAATTAATAACCAGAAAGAAGTATATCAAAATGCTAATA
CTGTGTATCTCTGTTGATATAGGCTATGCTGTTTATATTTGTGGTCTCCT
GCTATATGAGACTGGGTGAAATTCCTAGTAACAGCCCATTTCTATCATCC
AACCAAATGATCTTTAGCAGTGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_h09.b1 MSMg01no198_h09.b1 CHROMAT_FILE:
MSMg01no198_h09.b1 PHD_FILE: MSMg01no198_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:42 2005
         (316 letters)



>mm_chr6_3338979_3339694
          Length = 716

 Score =  495 bits (256), Expect = e-144
 Identities = 298/312 (95%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaactttggagtatatgctggagacccctttcatggtggctgactaagaagca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcctaactttggagtatatgctggagacccctttcatggtggctgactaagaagca 457

                                                                       
Query: 65  tatggctaatctaggtcatccatgattatcatttgtccatttcagatgatattcattttg 124
            |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 456 gatggctaagctaggtcatccatgattatcatttgtccatttcagatgacattcattttg 397

                                                                       
Query: 125 atgagttgaaattctagcgaaaagggtctactttggctaggcttgcccatagtgatgctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgagttgaaattctagcgaaaagggtctactttggctaggcttgcccatagtgatgctg 337

                                                                       
Query: 185 gcttttcttcttttgtcattacaagatattttgtgatgatgaaattccaaatgtaatgat 244
           ||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |||||| 
Sbjct: 336 gcttttcttcttttgtcattagaagatattttgtgaagatgaaatttcaaatataatgaa 277

                                                                       
Query: 245 atacacataatattttcacaaatatttccatttactgtttcatttatatttacatggttt 304
           |||||  |||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||
Sbjct: 276 atacatgtaatattttcacaaatattttcatttactgattcatttatgtttgcatggttt 217

                       
Query: 305 ctatgccatttg 316
           ||||||||||||
Sbjct: 216 ctatgccatttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)