Query= MSMg01no199_e01.b1 MSMg01no199_e01.b1 CHROMAT_FILE:
MSMg01no199_e01.b1 PHD_FILE: MSMg01no199_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:45 2005
(316 letters)
>mm_chr6_128493530_128494245
Length = 716
Score = 472 bits (244), Expect = e-137
Identities = 290/312 (92%), Gaps = 16/312 (5%)
Strand = Plus / Minus
Query: 5 gaattccagaccaagtttgaactcacgag-gaccctcacgtatgtgtaacgtttttgaca 63
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 458 gaattccagaccaagtttgaactcacg-gtgaccctcacgtatgtgtaacgtttttgaca 400
Query: 64 tccgctcgcaggttagagaactctatcaaagagttgtttcaaataggactgaagtaaacc 123
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcgctcccaggttagtgaactctatcaaagagttgtttcaaataggactgaagtaaacc 340
Query: 124 aaatctgaatgacagtgaccacggtgagtcccacgggcaatctgctgcacagccacgtca 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 339 aaatctgaatgacagtgaccacggtgagtcccacgggcaatctgctgcatagccacgtca 280
Query: 184 ttgtcctttttagatactggcttattagaaagaccttctgcaatatctacgcacatatgt 243
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctgccctttttagatactggcttattagaaagaccttctgcaatatctacgcacatatgt 220
Query: 244 acacctgaaagctg-ta---------ccgattaagagggtggaagc--tctcctccagtg 291
|||||||||||||| || |||||||||||||||||||| ||| |||||||
Sbjct: 219 acacctgaaagctgttatcttgctggccgattaagagggtggaagcaatct--tccagtg 162
Query: 292 ttgagcagatct 303
||||||||||||
Sbjct: 161 ttgagcagatct 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_e01.g1 MSMg01no199_e01.g1 CHROMAT_FILE:
MSMg01no199_e01.g1 PHD_FILE: MSMg01no199_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:45 2005
(567 letters)
>mm_chr6_128351049_128352016
Length = 968
Score = 1060 bits (548), Expect = 0.0
Identities = 563/568 (99%), Gaps = 1/568 (0%)
Strand = Plus / Plus
Query: 1 catcctgtgggagctgcttcttcctggggg-taaatgcattctctgttgctttaactgac 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 catcctgtgggagctgcttcttcctggggggtaaatgcattctctgttgctttaactgac 260
Query: 60 ctggctctgcctttctgtccttctccaagtcccgtctcagcagcccagagaacacaggag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggctctgcctttctgtccttctccaagtcccgtctcagcagcccagagaacacaggag 320
Query: 120 acagttgaggaatagggagggatgggagagcaggttctttggtgtcccagggcctgggcc 179
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 321 acagttgaggaatagggagggatgtgagagcaggttctttgatgtcccagggcctgggcc 380
Query: 180 ttgtgcttcttcatacagtcctacacctgtcttgctctgtggacactaccacctcagagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgcttcttcatacagtcctacacctgtcttgctctgtggacactaccacctcagagt 440
Query: 240 agcaagctcagccttttgacaccagggtttctcacctctctcctttgccttaccacctgc 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaagctcagccttttcacaccagggtttctcacctctctcctttgccttaccacctgc 500
Query: 300 acgatctgcagcaggtagcgcctatgactttgggcatgaagaagcaacattctgaaagcc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 acgatctgcagcaggtagcgcctatgactttgggcatgaagaagcaacattctggaagcc 560
Query: 360 cctcttcacgattgggatagccctgacacacacttcccacagtgaggagcctggagtcac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcttcacgattgggatagccctgacacacacttcccacagtgaggagcctggagtcac 620
Query: 420 tgtggagagaagggcatgggaattgtttgggtcccaagctggctgtgctttcccagaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggagagaagggcatgggaattgtttgggtcccaagctggctgtgctttcccagaaca 680
Query: 480 gcaactcactgccagggtctcctgaggccaagggtagaaaaacaatcccaggctcccagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaactcactgccagggtctcctgaggccaagggtagaaaaacaatcccaggctcccagg 740
Query: 540 gtcaggtggaggagtgtgtggagcttgg 567
||||||||||||||||||||||||||||
Sbjct: 741 gtcaggtggaggagtgtgtggagcttgg 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
