BAC Information

Click to search

BAC

Clone NameMSMg01-199G13
Chromosome6 (Build37)
Map Location 40,901,117 - 40,901,426
singlet/doubletsinglet
Overlap geneLOC194360
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik
Downstream gene1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199G13.T7 (MSMg01no199_g13.b1)MSMg01-199G13.TJ (MSMg01no199_g13.g1)
ACCAG386358AG386359
length710746
length of high quality
(start - end)		316 (50 - 365)614 (81 - 694)
definitionCHROMAT_FILE: MSMg01no199_g13.b1 PHD_FILE: MSMg01no199_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:57 2005CHROMAT_FILE: MSMg01no199_g13.g1 PHD_FILE: MSMg01no199_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTCCTAAGTGTCTCTGCTAGTCAGGACTTAGTCCACTATC
ATCTTACAATTGGGAGTCATAGGAATAGAAACTAAATATACTCTATTAAA
CATTTTCAGGTGAAAAATTTGATGGGTATTGACTGGCAATTTCCTCTTTT
CCTGTTTTTGGGATCCTCAAGGCAAGAGTCAGGAGGATAGAAATAAATAT
GAAGAACAGATCAAATTCTTTATTTGTACTGTTACACTGGATGTATGGTA
TGCTTTGTTAACTGGCATGCTGTTTTGTTATGATTGAGCTATAATTAGGG
TTTGGATCGATTCTTTTTCTAAACCCTCCCCCCCGATCTATTATCAACTG
TCCTATCTCTTTAGTGTTGAAATTAAGACAGAAATGAACTTTAAGGTTAT
CAAACCATGGAAACCTCTTTTATAATAAGTCTTTCATAATAAATTAATAC
CACATAATAAAACTTTGGAATGACTGATGAGTTCCACAGGGCCAGAATAC
TTTATCAAGCATCATTCTTTTGCAAAATTGAATTTGGTAAGCCTAGAGCA
TAAAGTGATTTTAGCACACACAATGTGAACATTTGTTACTTACAGATGAT
AGCAATGAGCAGCAGACAGTACCCACTGATCAGTGATGAGAGATCCCCCA
CATATGTGAG

NCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAA
CGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAAC
TGCGTGAATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTC
CCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCT
TCAGCTGGGGAATGGTGGCAATGAAGTGTTCCCGTAACACAGACTGTTGA
GAAGGATTCATCTGCGTGAATTCAGAACTCTTCAGCTGGGGAACAGGGTA
CCCGTAAGTATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGA
AATTCAAGACAGTCTATCACAAGTAAAGTGGGAAATAGCTTTACAAGGTA
TGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTC
ACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCA
AGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGA
AATATGGTACACAAAATAAGTATACAGGCCTTTCCACGGGTCTTGAACCC
GAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAA
GGAAAAGATTAAAGAATAGAATAAAGATCCATTACCGGAGGTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_g13.b1 MSMg01no199_g13.b1 CHROMAT_FILE:
MSMg01no199_g13.b1 PHD_FILE: MSMg01no199_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:57 2005
         (316 letters)



>mm_chr6_40900913_40901628
          Length = 716

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcctaagtgtctctgctagtcaggacttagtccactatcatcttacaattgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcctaagtgtctctgctagtcaggacttagtccactatcatcttacaattgg 264

                                                                       
Query: 65  gagtcataggaatagaaactaaatatactctattaaacattttcaggtgaaaaatttgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtcataggaatagaaactaaatatactctattaaacattttcaggtgaaaaatttgat 324

                                                                       
Query: 125 gggtattgactggcaatttcctcttttcctgtttttgggatcctcaaggcaagagtcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggtattgactggcaatttcctcttttcctgtttttgggatcctcaaggcaagagtcagg 384

                                                                       
Query: 185 aggatagaaataaatatgaagaacagatcaaattctttatttgtactgttacactggatg 244
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||  
Sbjct: 385 aggatagaaataaatatgaagaacagatcaaattattcatttgtactgttacactggaaa 444

                                                                       
Query: 245 tatggtatgctttgttaactggcatgctgttttgttatgattgagctataattagggttt 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatgatatgctttgttaactggcatgctgttttgttatgattgagctataattagggttt 504

                     
Query: 305 ggatcgattc 314
           ||||||||||
Sbjct: 505 ggatcgattc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |