Query= MSMg01no199_i17.b1 MSMg01no199_i17.b1 CHROMAT_FILE:
MSMg01no199_i17.b1 PHD_FILE: MSMg01no199_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:08 2005
(615 letters)
>mm_chr6_54794544_54795557
Length = 1014
Score = 874 bits (452), Expect = 0.0
Identities = 497/528 (94%), Gaps = 28/528 (5%)
Strand = Plus / Minus
Query: 88 ctctctctttttaatccaatgaccagcatagtggacaaaaacaaacccctaactacccat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 ctctctctttttaatccaatgaccagcatagtggacaaaaacaaacccctaactacccat 955
Query: 148 tgcttgggttatctaaacactaatactgaacagttcaaaagcaagccctcagcaggttag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 tgcttgggttatctaaacactaatactgaacagttcaaaagcaagccctcagcaggttag 895
Query: 208 aggggcgtctgtctgggatctccagaaattgtttttcagaactgagtgccatttaattct 267
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 894 aggggcgtctgtctgggatctccagaaattgttattcagaactgagtgccatttaattct 835
Query: 268 ctactttacttgctagcanaaaaaaaaaaaaaaaaaaaaaaaaaaaatcatctattgagt 327
||| | |||||||| |||||||||||||||||||||
Sbjct: 834 cta---t--ttgctagc----------------------aaaaaaaatcatctattgagt 802
Query: 328 tggtaaataagctataaactacagaaaatctgaaacactttctcattcttaaaagaatca 387
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggtaaataagctataaactacataaaatctgaaacactttctcattcttaaaagaatca 742
Query: 388 tgggggttaggaggaacatgtccaaaaatgaaaaatataattcctttatatcatggtagc 447
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 tgggggttaggaggaacatgtccaaaaatgaaaaatataattcctttataccatggtagc 682
Query: 448 aaagttaataacattatttaagtaattatatcaaaagtagatttctcactttgttgggaa 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 aaagttaataacattatttaagtaattatatcaaaagtagatttctcactttgttggg-a 623
Query: 508 agagaaaacattcagtcggatcttgtgactaactgaacttattagagtgaaaatttttaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agagaaaacattcagtcggatcttgtgactaactgaacttattagagtgaaaatttttaa 563
Query: 568 agaataatttaactcaaaacctaaggctctaagtatacaaatagaaat 615
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaataatttaactcaaaacctaaggctctaagtatacaaatagaaat 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_i17.g1 MSMg01no199_i17.g1 CHROMAT_FILE:
MSMg01no199_i17.g1 PHD_FILE: MSMg01no199_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:08 2005
(367 letters)
>mm_chr6_54755717_54756483
Length = 767
Score = 663 bits (343), Expect = 0.0
Identities = 361/367 (98%)
Strand = Plus / Plus
Query: 1 tcagctaagctaggcttgggcgtaggtaatgccacctgagggaaggagagggcccggtag 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctaagctaggcttgggcataggtaatgccacctgagggaaggagagggcccggtag 260
Query: 61 aactgcgtagggttttggtctgatacgtgtatctcccagcctttctgccaagcagttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgcgtagggttttggtctgatacgtgtatctcccagcctttctgccaagcagttctc 320
Query: 121 cttttggaagccacagttgcagctgacaagttgctggtggggtgtagtctagcactgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttggaagccacagttgcagctgacaagttgctggtggggtgtagtctagcactgcag 380
Query: 181 tgtgatacagcaaaagaagccaaaggcagggagtattggcattttgtgtaatggtttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgatacagcaaaagaagccaaaggcagggagtattggcattttgtgtaatggtttcat 440
Query: 241 actgtctggatttcataaatcaggacaaattaaaaaacagttcagaaatcaatatcagat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 actgtctggatttcataaatcaggacaaattaaaaaacagtttagaaatcaatatcagat 500
Query: 301 tgttaatttttccttgtcccatgtaaggaaatacttgacaaaggaggaggagggaagatg 360
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct: 501 tgtcaatttttccttgtcccatgtaagaaaatacttgaaaaaggaggaggagggaaggtg 560
Query: 361 gtggtgt 367
|||||||
Sbjct: 561 gtggtgt 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
