BAC Information

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BAC

Clone NameMSMg01-199I18
Chromosome6 (Build37)
Map Location 128,983,209 - 128,983,547
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f
Downstream geneKlrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199I18.T7 (MSMg01no199_i18.b1)MSMg01-199I18.TJ (MSMg01no199_i18.g1)
ACCAG386444AG386445
length778773
length of high quality
(start - end)
365 (48 - 412)339 (83 - 421)
definitionCHROMAT_FILE: MSMg01no199_i18.b1 PHD_FILE: MSMg01no199_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:08 2005CHROMAT_FILE: MSMg01no199_i18.g1 PHD_FILE: MSMg01no199_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCTCTGACGAACAGACTTGGAGTAGGAAGCAGCTCGTTATGA
GAGAAAAAAGTACCAGTCAGATAAAATGCTAGCTAGTCAGGTAAGGAAAA
AGCCAAAAGCGGCTGGCGAAGGCCAGCGTGCTGCTCGGCCTCCGGGCAGT
CGGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGCCCTCACCCTG
TGTAAGGCGTCAGTCCTGCACAGAGAGGGAATGGACAGAGAGGCAATGCA
AAGACTCGTTCATTCCCAGAGAGGAACAAAGGAAAATGCAACAGGCATTT
CCTGTCTTTGAAGAAGCCGAGCAGTGGTGGCGTACGCCGTTAATCCCAGC
ACTTGGGAGACAGACCCCCCCTCTTGCAGCCTACAAGGTCTTATTGTCCA
CCCTGGAGTTGTACATCAGGATTATAAAGCGTAACTTCAGGTTCTCTGTT
CTTGTCCCCTTGCCGACTTTCCCATATACTTGCTCCCCGACTATTTTCTT
TAACATTTTTGTTCAGTCCACCTGTCCGTTTTCCCTCTTCTGATTATCCT
TTGCGTTGTCCCCTCCTTTTGCCATTTACCTAATTTTGATTATTGCTTAA
CCCAACCACTCTTTTTATTATCTCTTCTCCCCTTTTCTCTCCCATCTCTC
CCCACCTTTTCTCTCCCCATTTTTTTCTCCCTTTTGTCCCTTTTTCCCTC
CACCCCTTTTTTCTCTTCTCTTCCCCCG
NCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTACTTCTTAAAGGAAA
TGAAAATTTAATTTTGCTATTTTCCTGGCTAGTGAAAAAGAGCATGTCTG
TCATGAAGGACAGCACAGGAGAGACCTGGCACCCAGTTGCTTCATGGTCA
CCGTGTTCCCTTTCATCAGTGTTGTTTAGATGCAGTTATTGCTAACATTT
GGGTGATATGCAAAGCCATATTATAAGCCCTCAGCTCCTGAGCAGCAGAA
GCAGGAAGATCTCTGTGAGTTAGCGGCCAGCCTATTCTGCATAGGGAGTT
CCAGGCCAGCCAGGACTACATACAGAGACTGTCTTCAAAAGGTAAATCAC
AGCAGAAAAATAAAATAGTTGGACCCCCCCGCTATTCTTAAAAACAAAAT
CCTACTGAGGGGTGGAGAGATGATTCAGCAGTTAAGAGGTCTGCTTGTTC
TTGCATAGGACCGACTTGTGCTTCCCCATTTTTTTACCCCCGTCAGTATT
CATCCCTAATTTCCAGTCTACCCATCGTCTTTTTTACGCCCCCTGTCTTT
TTTCTTTCCCTCTTTCCCCACGCCCCTTTCACCCCTTTCTTTTCCCTTTC
TTCCTTCTCACTAACTGCAAATTTTCACACTTTTTTCACACTTTTTCACC
TCATTTTTTCACTCCCTTTGCCACCTTTTATCTTCTCTAACCGTTCTCAC
CCTCCATTTTCACATTTTCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_i18.g1 MSMg01no199_i18.g1 CHROMAT_FILE:
MSMg01no199_i18.g1 PHD_FILE: MSMg01no199_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:08 2005
         (339 letters)



>mm_chr6_128983160_128983898
          Length = 739

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacttcttaaaggaaatgaaaatttaattttgctattttcctggctagtgaaaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actacttcttaaaggaaatgaaaatttaattttgctattttcctggctagtgaaaaagag 329

                                                                       
Query: 61  catgtctgtcatgaaggacagcacaggagagacctggcacccagttgcttcatggtcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catgtctgtcatgaaggacagcacaggagagacctggcacccagttgcttcatggtcacc 269

                                                                       
Query: 121 gtgttccctttcatcagtgttgtttagatgcagttattgctaacatttgggtgatatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtgttccctttcatcagtgttgtttagatgcagttattgctaacatttgggtgatatgca 209

                                                                       
Query: 181 aagccatattataagccctcagctcctgagcagcagaagcaggaagatctctgtgagtta 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 208 aagccatattataagccctcagctcgtgagcagcagaagcaggaagatctctgtgagtta 149

                                                                       
Query: 241 gcggccagcctattctgcatagggagttccaggccagccaggactacatacagagactgt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcggccagcctagtctgcatagggagttccaggccagccaggactacatacagagactgt 89

                                                  
Query: 301 cttcaaaaggtaaatcacagcagaaaaataaaatagttg 339
           |||||||||| ||||||||||||||||||||||||||||
Sbjct: 88  cttcaaaagggaaatcacagcagaaaaataaaatagttg 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)