BAC Information

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BAC

Clone NameMSMg01-199J03
Chromosome6 (Build37)
Map Location 14,484,832 - 14,485,379
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
Downstream genePpp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199J03.T7 (MSMg01no199_j03.b1)MSMg01-199J03.TJ (MSMg01no199_j03.g1)
ACCAG386457AG386458
length723759
length of high quality
(start - end)
550 (46 - 595)240 (87 - 326)
definitionCHROMAT_FILE: MSMg01no199_j03.b1 PHD_FILE: MSMg01no199_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:10 2005CHROMAT_FILE: MSMg01no199_j03.g1 PHD_FILE: MSMg01no199_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAGAATAGCCACTTAAAGGAGACCAAAAATGAAGTAGGTTTGT
GTTTTCTCCTATTATGATGCAATAAAAATTCTGATAGTTTCAAAGTATGA
AATGAAAAATAATTGGTTTAAAGCAACAGAAGTCAAATCCATAGTCATAT
GAAGACAAATTATAAAACCATCCTTACTAATTGAGAAAAATGACAAATAC
AACACCAAACATGATAAACCACAGATACTGATGAACCAGTAGAGATCAAA
GAATATAGTTGCAGAATGCCTTAGAAAATGTAAGAATTACATGGAACTCT
ATTTCCCCTTCCCACAGAAGTCCATGCATGCCTCCTAACATCTTTGGGTC
TACAGATTGTAGTATGGCTACCATTTACTTAATGGGTAATATCTACTTAT
AAATGATTACCTACAATATTTGTTCTGCGAGGTCTGAGTTACCTCGCTCA
GGATACTGCTTTGCTTTGTTTTTTGCTTGTTGCATCCATTCCCTTGCAGA
TTTCATGATGTCATTTTTTTAACAGTTGATTAAGACTTCATTGTGTATAT
ATACCACATTTTCTTTCTCCATTCTTCAGTTGTGAGACATCCAGGTTATT
TCCAGTTTCTAGCTATTATGAATTAAAGCTGCTATGAACTTAGTTGCACA
TGTATCCTTCCGGTATAAAAAAG
ACATCCACAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXATCGNCA
CGAGAGGNNGAACTATAGAAGGTTGCAAAAAAGACTAAACCCTTGATCTT
GGNCAAGGACGCCCCTGGACTGTTGGAACACTGCCGGAAGGCTTTAGCCA
TGCCAGAATTCAATTTTCAAAAGCACTTATAATAGGAAAATACTGAAAGA
GAGCACATGGATCCATACACTAGACTAATGCGGGAATGGAACATGGGAGT
GAAAAATTACTGTATGTTTAGGGAACACTAGACTCCAGGAGGAGAGCTTC
CTTGAAACTCTTTTGCCTCATGAGTGATTTTTTTTTTTTTCGGCCCGNCC
AGCTGACTCGACCGGAGAGCATAGCACTCCCCCAAGGAAGGTGCCCAGAT
ATCTGGAGCCCAAAATCGGGTTTGTCCCACAAGCTGTGTCGCTTCTGCAA
TCTACACTCTCACCTAAAGAGGGACCTGGGACTCAAGATGGTTCAGGCAG
TCAGAGCCCTTCTCCATGTACACCTCTCCTCTCCCAATTTCCCTTATGTT
TACCAGTCCTTATATACTCACTAATATTCTCCCTATCCCAAACCAAGAAC
ATAACAAAACAATCATCCATCTTAATCAAGTAGGCTTTCTTTACAGCGTA
TGCAGCGCCTTTTTTTCACCTTTGTTATTTCTTCCCCTTGCTTTATCCCT
ACTATTTACAAACCTCATATACCTATATTCTTCCCGTATCCTTTCCATTA
TAATGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_j03.b1 MSMg01no199_j03.b1 CHROMAT_FILE:
MSMg01no199_j03.b1 PHD_FILE: MSMg01no199_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:10 2005
         (550 letters)



>mm_chr6_14484628_14485578
          Length = 951

 Score =  928 bits (480), Expect = 0.0
 Identities = 532/550 (96%), Gaps = 6/550 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctagaatagccacttaaaggagaccaaaaatgaagtaggtttgtgttttctcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagaatagccacttaaaggagaccaaaaatgaagtaggtttgtgttttctcc 264

                                                                       
Query: 65  tattatgatgcaataaaaattctgatagtttcaaagtatgaaatgaaaaa-taattggtt 123
           || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 tactatgatgcaataaaaattctgatagtttcaaagtatgaaatgaaaaaataattggtt 324

                                                                       
Query: 124 taaagcaacagaagtcaaatccatagtcatatgaagacaaattataaaaccatccttact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaagcaacagaagtcaaatccatagtcatatgaagacaaattataaaaccatccttact 384

                                                                       
Query: 184 aattgagaaaaatgacaaatacaacaccaaacatgataaaccacagatactgatgaacca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattgagaaaaatgacaaatacaacaccaaacatgataaaccacagatactgatgaacca 444

                                                                       
Query: 244 gtagagatcaaagaatatagttgcagaatgccttagaaaatgtaagaattacatggaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagagatcaaagaatatagttgcagaatgccttagaaaatgtaagaattacatggaact 504

                                                                       
Query: 304 ctatttccccttcccacagaagtccatgcatgcctcctaacatctttgggtctacagatt 363
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 ctatttccccttcccacagaagtccatgcatccctcctaacatctttgggtctacagatt 564

                                                                       
Query: 364 gtagtatggctaccatttacttaatgggtaatatctacttataaatgattacctacaata 423
           |||| |||| || |||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct: 565 gtagcatggttatcatttacttaatgggtaatatctacttatatatgattacataccata 624

                                                                       
Query: 424 tttgttctgcgaggtctgagttacctcgctcaggatactgctttgctttgttttttgctt 483
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| 
Sbjct: 625 tttgttctgcgaggtctgagttacctccctcaagatactgctttgctttgttttttgct- 683

                                                                       
Query: 484 gttgcatccattcccttgcag-atttcatgatgtcattttttt--aacagttgattaaga 540
           |||||||||||| |||||| | |||||||||||||||||||||  ||||||||| |||||
Sbjct: 684 gttgcatccatttccttgc-gtatttcatgatgtcatttttttttaacagttgagtaaga 742

                     
Query: 541 cttcattgtg 550
           ||||||||||
Sbjct: 743 cttcattgtg 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space:   508140
Effective search space used:   508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)