BAC Information

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BAC

Clone NameMSMg01-201C21
Chromosome6 (Build37)
Map Location 67,243,489 - 67,243,814
singlet/doubletsinglet
Overlap geneIl12rb2
Upstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1
Downstream geneLOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201C21.T7 (MSMg01no201_c21.b1)MSMg01-201C21.TJ (MSMg01no201_c21.g1)
ACCAG386837AG386838
length1,1871,142
length of high quality
(start - end)		332 (43 - 374)710 (89 - 798)
definitionCHROMAT_FILE: MSMg01no201_c21.b1 PHD_FILE: MSMg01no201_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:09 2005CHROMAT_FILE: MSMg01no201_c21.g1 PHD_FILE: MSMg01no201_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGACAGCCAGGACTACATAGAGAAACCCTGTCTCTCTCCAGCCCAT
ATAAGAAACAGTTTTTCTTTTTCACAATTCACTGATTATTTGTACAAAGT
AATACAAGTACATAGTTAAGAGGTCAAAAAGAATATGCAATAAAGATGAA
AAGGCTTCCTATTCTCAACTTCTCTCCAGGGGTAGCTACTGTAATAATCA
ATGTTTGTATTTGGCTGGCTTCTGTAAGGGCTATCTCTGTCATACCCAGG
ATCACTAACTACATTAAGCAATTATTATAATTTGTGTGTGTGTGTGTGTA
GAGAGAGAGAGAGAGAGAGGTCTTNTNNTNTNCCTTTCTGATTCTCCTTC
TTTTCCCTCCCTANTCCCGACATTATTTCTTCGCTACCATCACCACATTT
TTTTTTTCCCCCCCAATAAATCCTTTAATCTCTTATAAAAAAAATGATGC
ATGTTTTACTTGAACTTATATTGTGCCGTATGTCCCTCTTCTATGTTATT
TTTGTCCTGTGTTTTTCTCGATTTTTTCTGTTACTCTACTGTCCTAATTT
TTGTCCTCCTTACCCATCTACTCCTGTTTTGTTTTTTTCTTTTTTTCCTC
CTTCTACCTTCTCTTTTTCATGTCCTCTTTCTTTATACCTTCTTTCTCTC
TTTTTTCCTTTCGTTTTTTCTTTCTTATTCTTCCTTTTTCTCCTTTCTTT
TGTCTTCTCTTCTTTTTCTTTTCCTTTTTCTTTTTTTTTCTTTATTTTCT
TTTCTCCTTTTTCCTATATTTTTTCTCTTCTCTTTCTTCTTCTCCTTTTC
TTTTTTTCTTCTTTTTCTTTCCCTTTTCTCCTTTCCTTTCTTTTCTCCTT
TCTTTTTTTTTTTCTTCTTCTTTCTCCCTTTTCTTCTTTTTTCTTTCTTT
CTCTCTACCTCTCTTTTTCTCTTCTCTCTTTTTTCCGTTATTTTTTTTAC
TTCTTTATTTCTTATCTTTCTATTCTTTCTCTCTTTTTTCTTCTTCTCTT
TCCTTCTTTCTCCTTTCTTCTCTTCTCCTTTTTTTTTCTTTTCCTCTTCT
TTTATTACTCTATTCTCCCTCTTCTTCTTTTTCTCCTTCTTACTTTTCTC
TTCATCTCTTCCTCTCTTTTCTTCTTCTTTCTCTTCG

CTTTTTTTTNNNNTATGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTACTCTTATCTTGGTTTAAGT
TTTGTAGTTTGTAGACCTTTAGAAAGTTATCTATTTCCCTTTTTTCCCAA
TCTAGTGGGATGTAACTTTTAAAGATATAGCTTTATGATTTTCTGCATTT
CGTTGGTATTTCCTGCCATGTCTTTTTTTATTCTCTAATCCTATTATTTG
AATTTTTATTTCTTTTGATTAATTTGACTAAAGATTTTTCATTATCACTT
ATCTTATCAAATAACCAACTCTATTGATTCATTTTTTTAATTCTCAACAT
TAAAATTTGTTGGGTGTTAAAGTAATATTTTGGCTATATTAGATTAAAGA
AAATATTGTATTAAGTTAATCTCACCAATTTCTTTTTAGTAGAATATCTT
TTATTTATTCTTTGAAATTTTCATACATGAAAACAGTGTATCATGATCTT
GTCAGTCCTCAAGTCCCTTTTCTCACTTCCCTCAGGAACCCATCACATCT
CTCTCCCCACTTCATGTCCTCTCCTTTTTTTTCTTTTTGTAACCCAATAA
ATCCACAATTGACTGATATTGTTGGCTTGAGGTTGATCTTCTACATGTCT
TGTGCAGGTCACTATAATGACTTCATGAGTACAATGGGCATATTGTAGTC
AGAACACAGAATTTCACAGAATTCATCTCCATCCACTGGCTCTTATAGTA
TTATTATTAGTATTATTATTATTTATTATTATTAGATATTTTCTTTATTT
TGCTTTCNNATGTTATCCCCTTTCCTAGTACCCCCCCCAAAAACCTTCTA
TTCCTTTCCCCCTCCCCCTGTTTCTATGAGGTGGTTCCCCTACTATCTAC
CCACTTCCACCTTCCTTTCTTGGCATTTGTCTTCCTGTATCTTGTTTCTT
TTTCTGATTTTATTCTTCTTCCTCTTTTTATGTCTCATAATTCTTCCTCT
TGTTCTCTATCTGTTTGTAACACTCTCTCTCCTCTTTTATTTTCTTTGTT
TTCGTTTTATTCCACCTAAACTTNATTATATTTTCTTCTCCTTTCTCTCT
TTCTTTTTCCTCTCTTTTTTTCTTTTATTTTCTTCCTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_c21.b1 MSMg01no201_c21.b1 CHROMAT_FILE:
MSMg01no201_c21.b1 PHD_FILE: MSMg01no201_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:09 2005
         (332 letters)



>mm_chr6_67243285_67244016
          Length = 732

 Score =  600 bits (310), Expect = e-176
 Identities = 323/328 (98%), Gaps = 2/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagccaggactacatagagaaaccctgtctctctccagcccatataaga 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagccaggactacacagagaaaccctgtctctctccagcccatataaga 264

                                                                       
Query: 65  aacagtttttctttttcacaattcactgattatttgtacaaagtaatacaagtacatagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacagtttttctttttcacaattcactgattatttgtacaaagtaatacaagtacatagt 324

                                                                       
Query: 125 taagaggtcaaaaagaatatgcaataaagatgaaaaggcttcctattctcaacttctctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagaggtcaaaaagaatatgcaataaagatgaaaaggcttcctattctcaacttctctc 384

                                                                       
Query: 185 caggggtagctactgtaataatcaatgtttgtatttggctggcttctgtaagggctatct 244
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaggtagctaccgtaataatcaatgtttgtatttggctggcttctgtaagggctatct 444

                                                                       
Query: 245 ctgtcatacccaggatcactaactacattaagcaattattataatttgtgtgtgtgtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtcatacccaggatcactaactacattaagcaattattataatttgtgtgtgtgtgtg 504

                                       
Query: 305 tgtagagagagagagagagagaggtctt 332
           |  |||||||||||||||||||||||||
Sbjct: 505 t--agagagagagagagagagaggtctt 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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