BAC Information

Click to search

BAC

Clone NameMSMg01-201F13
Chromosome6 (Build37)
Map Location 51,591,400 - 51,591,730
singlet/doubletsinglet
Overlap genenone
Upstream geneNpvf, LOC100040877, EG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
Downstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201F13.T7 (MSMg01no201_f13.b1)MSMg01-201F13.TJ (MSMg01no201_f13.g1)
ACCAG386942AG386943
length703707
length of high quality
(start - end)
263 (149 - 411)331 (377 - 707)
definitionCHROMAT_FILE: MSMg01no201_f13.b1 PHD_FILE: MSMg01no201_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:26 2005CHROMAT_FILE: MSMg01no201_f13.g1 PHD_FILE: MSMg01no201_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCTGCTCCGTGTTTACCTTTTGGCTTTTAATTCTTACTGCAAG
GTGTAAGTCTGACTACCATGAGACTGTCAGCAAGCCATGGCCTACTTGTC
CCCCCTCAGCCCCTGTGCCAGCCACATAACTTAAACTCACAGCACATGAC
AACTTGGGATGGCACATTGTCCTGGTTTGCTTTCTGTTTCTGTGATAAAG
ACCATGACCGCAAGTAACTTGGGGGAGGAAGTAGTCTATTTGCCTTACAT
TTCCACATCACGGTGCATCATGGAGAGGAAGTAGGAATTCAAGGCAGGAA
TCCAGAGTCAGGAACTGAGGCAAGGCTGAGAGAACACTGCTTGTTGGCTA
CATAGCAGTGACTCACGGCTTCCCATCGGTCCCTAACTGCCATCCACCTG
TATTATCCCCGAGGCTAGCTCCATTTGCTTTCTCATATAGCCCACCACCA
CTTTCCCAGTAGAAACTCCTGGATGGTGGGATGGCCCACCCAAATCACTG
ATTAATCAACAAAATGCCTACAAACTAGCCTACAGGACAGTCTGATGGCC
TCGACTGACGATTCCTCTTCCCACGTGACACTACCTTGTGTCAAGTACAC
AAAAAAAATCTAAACAGCTGACTCCTTCGATATTTGACACACAAACATAT
CAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCAGAATTACATGCTG
GGAACCTGTGTCAAGAAGGACAAAAAAAGTATGCATAATTAATCAGTGCT
AGTAAGGCACTGTCCTGCCCACCATTGTCTCCGCTCTGGTTCTGCAAGAG
GTCTGATAAATTATTAATCTGTTAATTGCTGTCATCACCTGAGAGGACCA
ATCTGGTTCTGACAAGATGATGTCCTCCAGGGTGAAGCTTCCCCTGCATA
GGTAGTTGTTTCCATCTTGGGATGGTCGGCTCTGGGCGGAATTGTTTCCC
CTGAAATGCATAGTGACTGCAGCCTAGGACAGTGACTTATCTTTGCCTTT
AGCTCTGCAAGGGGACAGGACCAGTTAGGTAGGCAGACTCTCTAGTGAGT
ACGGCACCTGCGCAGAGAGAAGCGGGTGGCTGGCCCGGTGCAAAGCAGAC
AGACACAAAGAGGAGGCAGAAGTGCTGGACCTTTCTTTGTCTTGCTTTCA
GTTTGCCTGTGGTCCCAAGTGAAGACTCCACACTTGTTAGGAAAAGCAGC
CTCCCAGCACCTGTTACAAAGGTGCATGCAAGTATTTCTAAAGGAATAGT
AACTTTATATATGAAAGAATATTGGTTCACTTTGAGGTGCAAAAGGACAT
TATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_f13.g1 MSMg01no201_f13.g1 CHROMAT_FILE:
MSMg01no201_f13.g1 PHD_FILE: MSMg01no201_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:26 2005
         (331 letters)



>mm_chr6_51591200_51591930
          Length = 731

 Score =  609 bits (315), Expect = e-179
 Identities = 327/331 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacagtgacttatctttgcctttagctctgcaaggggacaggaccagttaggtaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacagtgacttatctttgcctttagctctgcaaggggacaggaccagttaggtaggcag 260

                                                                       
Query: 61  actctctagtgagtacggcacctgcgcagagagaagcgggtggctggcccggtgcaaagc 120
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 actctctagggagtacggcacctgtgcagagagaagcgggtggctggcccggtgcaaagc 320

                                                                       
Query: 121 agacagacacaaagaggaggcagaagtgctggacctttctttgtcttgctttcagtttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacagacacaaagaggaggcagaagtgctggacctttctttgtcttgctttcagtttgc 380

                                                                       
Query: 181 ctgtggtcccaagtgaagactccacacttgttaggaaaagcagcctcccagcacctgtta 240
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtggtcccaagtgaagactccacgtttgttaggaaaagcagcctcccagcacctgtta 440

                                                                       
Query: 241 caaaggtgcatgcaagtatttctaaaggaatagtaactttatatatgaaagaatattggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaggtgcatgcaagtatttctaaaggaatagtaactttatatatgaaagaatattggt 500

                                          
Query: 301 tcactttgaggtgcaaaaggacattattcat 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 tcactttgaggtgcaaaaggacattattcat 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)